Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq146 196 2e-46 >seq146 Length=78441 Score = 196 bits (216), Expect = 2e-46 Identities = 218/291 (75%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || ||||| || || || ||| | | || |||||||| | ||||| || ||| | Sbjct 47508 TCAGGTACCACGGCTGCCACGGTCAGCAGGGTACGCGCCCTCTTTGACTTTACTCCCACT 47567 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 ||||| |||||| ||| ||| || || || | ||||| || || ||| |||||| Sbjct 47568 GAACCTGGCGAGCTGGAATTCAAGAAGGGTGATGTCATTGCTGTGCTGGAGAGCGTGTAC 47627 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 ||||| |||||| || || || ||| |||| ||||||||||| |||||||| ||| Sbjct 47628 AAGGATTGGTGGCGTGGATCGCTCAAGGGAAAGACGGGCATCTTCCCTCTCAACTACGTC 47687 Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608 ||||| ||| ||||| || |||||| | || |||| ||||||||||| ||||| Sbjct 47688 GAGAAACTGGCAGATCCCACACCAGAGGAGATGCAGCGAGAGGCTCAGATGGAAGCGGAG 47747 Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 || ||||| ||||||||||||||||||||||| ||| | ||| ||||| || Sbjct 47748 GTTTTTGCTGAGATCAAGAACGTGGAGAAGCTCCTAACGCTGTTGAGCGCT 47798 Score = 91.5 bits (100), Expect = 5e-15 Identities = 158/227 (70%), Gaps = 12/227 (5%) Strand=Plus/Plus Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || || ||| |||| | | || || || ||| ||||| |||| |||| || ||||| Sbjct 47924 CTATATCACCAGACGCTTGCAATCCGCCCTAAGCTGATCAAGCTGATTGAGAAATATTCT 47983 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTAC--GCGAATTTGTGTGTTGGCCACTGATCGTGT 819 |||||||||||||| ||| |||| || ||| | | ||| | ||| | | Sbjct 47984 CAAAAGAAGGGTAA-TGGCCACTTTCACCTGCGTA-----GCATTGCACGCTGCTAATAA 48037 Query 820 TC----CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACG 875 | ||||||| ||||| ||||||||||| |||||||||||||| || | ||||| | Sbjct 48038 CCAACGCAGATGACTTCACCCAGCTCAACGAAAAGTTCATCAAGGCTCGAAGAGACTATG 48097 Query 876 AAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 || | || || ||| | || ||||| || || | |||| | |||| Sbjct 48098 AATCGCTGCTAGAATCGTCCATGTCTCATCCTCCTCAGCACAACTAC 48144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945325835340