Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F001990665.1_202017-02-08] 1,054 sequences; 40,676,380 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq278 210 7e-51 >seq278 Length=477856 Score = 210 bits (232), Expect = 7e-51 Identities = 221/291 (76%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || ||||| || || || ||| | | || |||||||| | |||||| |||||| | Sbjct 31036 TCAGGTACCACGGCTGCCACGGTCAGCAGGGTGCGCGCCCTCTTCGACTTTACGCCCACC 30977 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 |||||||||||| ||| ||| || || || | ||||| || || ||| |||||| Sbjct 30976 GAACCCGGCGAGCTGGAATTCAAGAAGGGTGATGTCATTGCTGTGCTGGAGAGCGTGTAC 30917 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 ||||| |||||| || || || ||| |||| ||||||||||| |||||||| ||| Sbjct 30916 AAGGATTGGTGGCGTGGATCGCTCAAGGGAAAGACTGGCATCTTCCCTCTCAACTACGTC 30857 Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608 |||||||| ||||||||| |||||| | || |||| ||||||||||| ||||| Sbjct 30856 GAGAAGCTAGCGGATCCTACACCAGAGGAGATGCAGCGAGAGGCTCAGATGGAAGCGGAG 30797 Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 || || || ||||||||||||||||||||||| || | ||| ||||| || Sbjct 30796 GTTTTCGCTGAGATCAAGAACGTGGAGAAGCTCCTGACGCTGTTGAGCGCT 30746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945416177130