Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1136 197 4e-47 >seq1136 Length=50156 Score = 197 bits (218), Expect = 4e-47 Identities = 244/331 (74%), Gaps = 7/331 (2%) Strand=Plus/Plus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || ||||| || || || ||| | | || |||||||| | ||||| |||||| | Sbjct 22504 TCAGGCACCACGGCTGCCACGGTCAGCAGGGTACGCGCCCTCTTTGACTTTACGCCCACC 22563 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 || ||||||||| ||| ||| || || || | ||||| || || ||| || ||| Sbjct 22564 GAGCCCGGCGAGCTGGAATTCAAAAAGGGTGATGTCATTGCTGTGCTGGAGAGCGTCTAC 22623 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 ||||| |||||| || || || ||| |||| |||||||| || |||||||| ||| Sbjct 22624 AAGGATTGGTGGCGTGGATCGCTCAAGGGAAAGACGGGCATCTTTCCTCTCAACTACGTC 22683 Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608 ||||||||| |||||| || |||||| | || |||| ||||||||||| ||||| Sbjct 22684 GAGAAGCTGGCGGATCCCACACCAGAGGAGATGCAGCGAGAGGCTCAGATGGAAGCGGAG 22743 Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGA-- 666 || ||||| |||||||||||||| |||||||| ||| | ||| ||||| || | | | Sbjct 22744 GTTTTTGCCGAGATCAAGAACGTAGAGAAGCTCCTAACGCTGTTGAGCGCT--TCCAACA 22801 Query 667 -GTGCCGACGCTAGG--GACAATGAGGAGAT 694 | | | ||| ||| |||||||||||||| Sbjct 22802 CGGGACCACGGGAGGAAGACAATGAGGAGAT 22832 Score = 78.8 bits (86), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 ||||||| ||||| ||||||||||| |||||||||||||| || | ||||| ||| | | Sbjct 23015 CAGATGACTTCACCCAGCTCAACGAAAAGTTCATCAAGGCTCGAAGAGACTATGAATCGC 23074 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || ||| | || ||||| || || | |||| | |||| Sbjct 23075 TGCTAGAATCGTCCATGTCTCATCCTCCCCAGCACAACTAC 23115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945189276225