Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20virens_20[genbank_20GCA_5F001835465.1_202016-10-24] 107 sequences; 45,820,083 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1 217 5e-53 >seq1 Length=17084797 Score = 217 bits (240), Expect = 5e-53 Identities = 225/292 (77%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || ||||| || || || ||| | | || |||||||| | ||||| |||||| | Sbjct 1878329 TCAGGTACCACGGCTGCCACTGTCAGCAGGGTACGCGCCCTCTTTGACTTTACGCCCACC 1878270 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 |||||||||||| ||| ||| || || ||| | ||||| || || ||| |||||| Sbjct 1878269 GAACCCGGCGAGCTGGAATTCAAGAAGGGGGACGTCATTGCTGTGCTGGAGAGCGTGTAC 1878210 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 |||||||||||| || || || ||| |||| ||||||||||| ||||||||||| Sbjct 1878209 AAGGACTGGTGGCGTGGATCGCTCAAGGGAAAGACGGGCATCTTCCCTCTCAACTATGTT 1878150 Query 549 GAGAAGCT-GCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGA 607 |||||||| |||| |||| || |||||| | || |||| || ||||||||||| || Sbjct 1878149 GAGAAGCTCGCAG-ATCCCACACCAGAGGAGATGCAGCGAGAGGCCCAGATGGAGGCAGA 1878091 Query 608 AGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 |||||||| ||||| ||||||||||||||||||||| | ||| ||||| || Sbjct 1878090 GGTCTTTGCTGAGATAAAGAACGTGGAGAAGCTGCTAACGCTGTTGAGCGCT 1878039 Score = 87.8 bits (96), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 723 ATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAAT 782 || || || ||| ||||| |||| |||| ||||| || || ||||||||||| || || Sbjct 1877885 ATCCGCCCAAAGCTGATCAAGCTGATTGAGAAGTACTCACAGAAGAAGGGTAA-TGACAT 1877827 Query 783 CTTTTACG--CGAATTTGTGTGTTGGCCACTGATCGTGTTC-CAGATGATTTCACGCAGC 839 || || || || | || | ||||| | | | ||||||| ||||| |||| Sbjct 1877826 GCTTCACCGACGCATCTTTGAATA--CCACTAACAATCAACGCAGATGACTTCACCCAGC 1877769 Query 840 TCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGT 899 ||||||| |||||||||||||| || | ||||| ||| | || ||||| | || |||| Sbjct 1877768 TCAACGAAAAGTTCATCAAGGCCCGAAGGGACTATGAATCGCTGCTTGAGTCGTCCATGT 1877709 Query 900 CGCAACCAGCGCAGC 914 | || || | |||| Sbjct 1877708 CTCATCCTCCTCAGC 1877694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945581338665