Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20interdigitale_20[genbank_20GCA_5F900162065.1_202017- 04-02] 3,285 sequences; 22,591,190 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1739 297 6e-77 >seq1739 Length=53481 Score = 297 bits (328), Expect = 6e-77 Identities = 640/945 (68%), Gaps = 44/945 (5%) Strand=Plus/Minus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68 ||| | ||||| || || | || | ||||||||||||||||| | ||||| || || Sbjct 7007 AAGTCGAAGATACTAGAACACATAGAGCAATGGACGGAGATGTTCTCTAGTAATCCCGAC 6948 Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGT--GCGTGTG-ATC-- 123 || || |||||||| || ||||| | | ||| ||| | || ||| || | || ||| Sbjct 6947 CTAGGGATCATGGAACAAGCCTACCTTAAGCTCAAGTCTCAGAGTAAGCATCTGCATCGG 6888 Query 124 ----------AACTCTGG--TTCGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACC 171 || | || | || | || | | | |||| | | |||||| |||| Sbjct 6887 TCTCTTTGCAAAATGTGACCTCCGATTGGTTTCCGGGCTAACGGGCCGCAGACCCAAACC 6828 Query 172 TGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAG 231 | | ||| ||||| ||||| ||| | || || || | |||| | | ||||||| Sbjct 6827 TTCAACCCCCGTCCAAACCAACTAAGCGGGAAATAACAGAGTTGGACAGACTAAAGGAAG 6768 Query 232 AGGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAG------CGGGACCGAGC 285 |||| ||||| |||||||| || || || ||||||||||| | || ||||| | Sbjct 6767 AGGAAGAGCTGCAGATGGCCCTTGCGCTGTCCGTCAAGGATAAACAGCCCGCCACCGAAC 6708 Query 286 --CATCCGCCGC-CAG---GTCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCC 339 || ||| | ||| |||| ||||| ||||| || || || ||| Sbjct 6707 AGCAGCCGTCAAACAGCGAGTCCTCCCAGC---AAGCATCTGCTGCAGAAGGGTCCAATA 6651 Query 340 CGGAA--CA-AGAGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCC 396 | | | || | || | | ||| |||||||| || || || || || || ||||| | Sbjct 6650 CTGCATCCACATCTCAACCTACAGCCATTGCATCAGGTACGACTGCTGCAACTGTCTCTC 6591 Query 397 GCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAG 456 | ||| | || || ||||||||| ||||||||| || |||||| | ||||| || | Sbjct 6590 GGGTTAGAGCACTATACGACTTCCAGCCCTCGGAGCCAGGCGAGCTTCAGTTCCGAAAGG 6531 Query 457 GCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTG 516 | || | || || ||||| || || ||||||||||| |||||||| |||||||| || | Sbjct 6530 GTGATGTCATCGCTGTTCTGGAATCGGTGTACAAGGATTGGTGGAAAGGTTCTCTTCGCG 6471 Query 517 GACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGG 576 | ||||| || |||||||| || |||||||| ||||| || ||||| || |||| | Sbjct 6470 GCCAGACTGGTATCTTCCCTCTAAACTATGTTGAGAAACTCTCCGATCCCACGCAGGAAG 6411 Query 577 AGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGA 636 | || | | ||||| |||||||| || || || ||||||||||||||||| || |||| Sbjct 6410 AACTTCAACGGGAAGCGCAGATGGAAGCAGAGGTGTTTGCGGAGATCAAGAATGTCGAGA 6351 Query 637 AGCTGCTAGCTCTGCTGAGCACTAG---TTCGAGTGCCGACGCTAGGGACAATGAGGAGA 693 | |||| || || || |||||||| |||| ||| ||| || ||||||| Sbjct 6350 AATTGCTGGCCCTTCTCAGCACTAGTAATTCGGAACTAAACGTGCAGGAAAACGAGGAGA 6291 Query 694 TCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCA 753 | || | || ||||| || | | || || |||||| |||| ||| | || |||| Sbjct 6290 TTACCACCCTATACCATTCTACTCTTGCCATTCGACCGAAGCTGATAGAGTTGATCGGCA 6231 Query 754 AGTATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGA 813 |||| || | ||||| |||| || | ||| | | | | | | || |||||||| Sbjct 6230 AGTACTCCAAGAAGAAAGGTATGTCG--TCTGGTTCTCTGA-TGATATGGAAGCCACTGA 6174 Query 814 --TCGTGT-TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGA 870 | ||| ||||||| || ||||| | || || ||||||||||| || || || || Sbjct 6173 ACTAATGTGAACAGATGACTTTACGCAATTGAATGAAAAGTTCATCAAAGCTCGTCGGGA 6114 Query 871 CTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 |||||| | || |||||| | || ||| | || || | ||||| Sbjct 6113 TTACGAAGCTCTGCTTGAATCTTCAATGGCACATCCTGGTCAGCC 6069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945027079575