Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichophyton_20rubrum_20[genbank_20GCA_5F000812105.1_202014-12-31] 380 sequences; 22,521,034 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq39 288 3e-74 >seq39 Length=193750 Score = 288 bits (318), Expect = 3e-74 Identities = 640/949 (67%), Gaps = 50/949 (5%) Strand=Plus/Minus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68 ||| | ||||| || || | || | ||||||||||||||||| | ||||| ||||| Sbjct 157042 AAGTCGAAGATACTAGAACACATAGAGCAATGGACGGAGATGTTCTCTAGTAATCCTGAC 156983 Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGT--GCGTGTG--ATCA 124 || || |||||||| || ||||| | | ||| ||| | || ||| || | | ||| Sbjct 156982 CTAGGGATCATGGAACAAGCCTACCTTAAGCTCAAGTCTCAGAGTAAGCCTCTTGCATCG 156923 Query 125 A---CTCTG----GTTCG--------TTGGGAGCACTGACCAACGTGTTGTAGACCCTAA 169 || || || || |||| | | | | |||| | | |||||| || Sbjct 156922 GTCTCTTTGAAAAGTGCGACCTCCGATTGGTTTC-CGGGCTAACGGGCCGCAGACCCAAA 156864 Query 170 CCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGA 229 ||| | ||| ||||| ||||| ||| | || || || | |||| | | ||||| Sbjct 156863 CCTTCAACCCCCGTCCAAACCGACCAAGCGGGAAATAACAGAGTTGGACAGACTAAAGGA 156804 Query 230 AGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAG------CGGGACCGA 283 || || ||||| |||||||| || || || ||||||||||| | || ||||| Sbjct 156803 GGAAGAAGAGCTGCAGATGGCCCTTGCGCTGTCCGTCAAGGATAAACAACCCGCCACCGA 156744 Query 284 ------GCCATCCGCCGCCAGGTCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGC 337 |||||| | | |||| ||||| ||||| || || || ||| Sbjct 156743 ACAGCAGCCATCAAACAGCGAGTCCTTCCAGC---AAGCATCTGCTGCAGAAGGGTCCAA 156687 Query 338 CCCGGAA-CAAGAGC--AGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTC 394 | | | | | | | | | | ||| |||||||| || ||||| || || |||||||| Sbjct 156686 TACTGCATCTACATCTCAACCTACAGCCATTGCATCGGGTACCACGGCCGCCACCGTCTC 156627 Query 395 CCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAA 454 || ||||| || | |||||||| ||||||||| || |||||| | ||||| || Sbjct 156626 TCGGGTTCGAGCATTATACGACTTTCAGCCCTCGGAGCCAGGCGAGCTTCAGTTCCGAAA 156567 Query 455 AGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCG 514 ||||| | || || ||||| || || ||||||||||| ||||||||||||||||| || Sbjct 156566 GGGCGATGTCATCGCTGTTCTGGAATCGGTGTACAAGGATTGGTGGAAGGGTTCTCTCCG 156507 Query 515 TGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGA 574 || ||||||||||||||||| || |||||||| ||||| || |||||| || |||| Sbjct 156506 CGGCCAGACCGGCATCTTCCCTCTGAACTATGTTGAGAAACTCTCGGATCCCACGCAGGA 156447 Query 575 GGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGA 634 || || || | || || |||||||| || || || ||||||||||||||||| || || Sbjct 156446 AGAACTTCAGCGGGAGGCGCAGATGGAAGCAGAGGTGTTTGCGGAGATCAAGAATGTCGA 156387 Query 635 GAAGCTGCTAGCTCTGCTGAGCACTAGT---TCGAGTGCCGACGCTAGGGACAATGAGGA 691 ||| |||| || || || ||||| ||| ||| | | ||| || ||||| Sbjct 156386 GAAATTGCTGGCCCTCCTCAGCACGAGTAACTCGGAACTAAATGTGCAGGAAAACGAGGA 156327 Query 692 GATCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGG 751 || || | || ||||| || | | || || |||||| |||||||| | || || Sbjct 156326 AATTACCACCCTCTACCATTCTACTCTAGCCATTCGACCGAAGCTGATCGAGTTGATCGG 156267 Query 752 CAAGTATTCGCAAAAGAAGGGTAAGTGGAATCT---TTTACGCGAATTTGTGTG--TTGG 806 |||||| || | ||||| |||| || | ||| ||| | || | | | | Sbjct 156266 CAAGTACTCCAAGAAGAAAGGTATGTCG--TCTGGGTTTCCTATGATACGAGGGGATATC 156209 Query 807 CCACTGATCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCC 866 ||| || ||| |||||| || ||||| | || || ||||||||||| || || | Sbjct 156208 GAACTAAT-GTG-AATAGATGACTTTACGCAATTAAATGAAAAGTTCATCAAAGCTCGTC 156151 Query 867 GCGACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 | || |||||| | || |||||| | || ||| |||| || | ||||| Sbjct 156150 GGGATTACGAAGCTCTGCTTGAATCTTCAATGGCGCATCCTGGTCAGCC 156102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945533726100