Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014- 04-02] 7 sequences; 34,812,353 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq5 311 3e-81 >seq5 Length=2817054 Score = 311 bits (344), Expect = 3e-81 Identities = 636/925 (69%), Gaps = 40/925 (4%) Strand=Plus/Plus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||||| |||||| | || | |||| |||||| | |||||||| | | | || Sbjct 1449841 TCAAGGCCAAGATCTTGGAAAGGATGGCCGAATGGGCCAAGATGTTCTCGAAAGAACCGA 1449900 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAAC 126 | || || | |||||||| || || |||| ||| |||| ||||||| | | || Sbjct 1449901 ACCTGGGTACTATGGAGCAAGCGTACATGAAGCTCAAGAGTCAAAGTGAGCGCC--CAGT 1449958 Query 127 TCTGGTTCGTTGGGAG-CA--CTGACCAACGTGTTGT--AGACCCTAACCTGCGACCTCC 181 |||| |||||| || || || | || | |||||| || ||| || || Sbjct 1449959 ACTGGATCGTTGTTAGGCAAGCTCATTCACATACAAACCAGACCCAAATTTGCATCCGCC 1450018 Query 182 -GTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240 || | | ||| ||| ||||||||| || || || || |||||||| || |||| Sbjct 1450019 AGTAGCA-CCTACCAAGCGCCAGATCACCGATGTAGATCGGCAAAAGGAAGAAGAAGAGC 1450077 Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGA-AAG-CGGGACCGAGCCATCCGCCGCCAG 298 ||||||||||||| ||||| || ||||||| ||| || | | || || || | Sbjct 1450078 TACAGATGGCGCTTGCACTGTCGATCAAGGACAAGTCGTCAGCTGCGCAGTCGTCGAC-- 1450135 Query 299 GTCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCG---CCCCGGAACAAGA-GCAGC 354 | | | || || ||| | || | | | |||||| | | |||||| || | Sbjct 1450136 GCCTATACACGGACAGACAACATCCTCTCCAGAATCCGGAGCATCTCAACAAGTCGCTCC 1450195 Query 355 ATCA-AGCTATTGC-ATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTA 412 | ||| || | ||| || ||||| |||||||| || || ||||| || ||||| | Sbjct 1450196 CCCGCAGCCGTTACCATCGGGGACCACGGCAGCTACTGTGTCTCGCGTACGTGCCCTGTT 1450255 Query 413 CGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGT 472 |||||| ||| ||||| || ||||| | || || ||||||||||||||||| || Sbjct 1450256 TGACTTCCAGCCTTCGGAGCCTGGCGAACTTCAATTTCGAAAAGGCGACATTATTGCTGT 1450315 Query 473 TCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTT 532 |||||||| || |||||||| |||||||||||||| || | || ||||| || || || Sbjct 1450316 GCTCGAGTCGGTCTACAAGGATTGGTGGAAGGGTTCACTAAGAGGGCAGACGGGAATATT 1450375 Query 533 CCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGC 592 ||| || |||||||| ||||||||| ||||| || |||||||||| ||||||| || Sbjct 1450376 CCCGCTAAACTATGTGGAGAAGCTGTCAGATCCCACTCAGGAGGAGCTGCAGAGAGAGGC 1450435 Query 593 TCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCT 652 || |||||||| || |||||||| |||||||||||||| ||||||||||| |||| | Sbjct 1450436 ACACATGGAGGCTGAGGTCTTTGCTGAGATCAAGAACGTCGAGAAGCTGCTTACTCTTTT 1450495 Query 653 GAGCACTAG----TTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACC 708 ||| || || | ||||| | | || ||||||||||| || || | | |||| Sbjct 1450496 GAGTACGAGCAGCTCCGAGT-TGAATGTGAGAGACAATGAGGAAATAACGACCTTATACC 1450554 Query 709 ACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGA 768 || ||| || | ||| | || ||| | |||||||| || || ||||| || || |||| Sbjct 1450555 ACTCGACCCTGGCCATAAGACCCAAGCTCATCGAGCTAATAGGGAAGTACTCACAGAAGA 1450614 Query 769 AGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA------CTGATCGTGTTC- 821 | |||| | || | || || | | | ||| || | | | | Sbjct 1450615 AAGGTA---TTACTCAGT--AGCAAAATCTAG----GTCCAAAAAAGCTAAGAGAATGCA 1450665 Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 |||||| ||||| || || || ||||| |||||||| || ||| | ||||| ||| | | Sbjct 1450666 TAGATGACTTCACACAACTGAATGAGAAATTCATCAAAGCTCGCAGAGACTATGAATCGC 1450725 Query 882 TCCTTGAAGCCTCGATGTCGCAACC 906 | | || ||||| ||||||||||| Sbjct 1450726 TATTAGAGGCCTCCATGTCGCAACC 1450750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945598779165