Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Umbilicaria_20muehlenbergii_20[genbank_20GCA_5F000611775.1_202014-
04-02] 7 sequences; 34,812,353 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq5 311 3e-81
>seq5
Length=2817054
Score = 311 bits (344), Expect = 3e-81
Identities = 636/925 (69%), Gaps = 40/925 (4%)
Strand=Plus/Plus
Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66
||||||| |||||| | || | |||| |||||| | |||||||| | | | ||
Sbjct 1449841 TCAAGGCCAAGATCTTGGAAAGGATGGCCGAATGGGCCAAGATGTTCTCGAAAGAACCGA 1449900
Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAAC 126
| || || | |||||||| || || |||| ||| |||| ||||||| | | ||
Sbjct 1449901 ACCTGGGTACTATGGAGCAAGCGTACATGAAGCTCAAGAGTCAAAGTGAGCGCC--CAGT 1449958
Query 127 TCTGGTTCGTTGGGAG-CA--CTGACCAACGTGTTGT--AGACCCTAACCTGCGACCTCC 181
|||| |||||| || || || | || | |||||| || ||| || ||
Sbjct 1449959 ACTGGATCGTTGTTAGGCAAGCTCATTCACATACAAACCAGACCCAAATTTGCATCCGCC 1450018
Query 182 -GTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240
|| | | ||| ||| ||||||||| || || || || |||||||| || ||||
Sbjct 1450019 AGTAGCA-CCTACCAAGCGCCAGATCACCGATGTAGATCGGCAAAAGGAAGAAGAAGAGC 1450077
Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGA-AAG-CGGGACCGAGCCATCCGCCGCCAG 298
||||||||||||| ||||| || ||||||| ||| || | | || || || |
Sbjct 1450078 TACAGATGGCGCTTGCACTGTCGATCAAGGACAAGTCGTCAGCTGCGCAGTCGTCGAC-- 1450135
Query 299 GTCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCG---CCCCGGAACAAGA-GCAGC 354
| | | || || ||| | || | | | |||||| | | |||||| || |
Sbjct 1450136 GCCTATACACGGACAGACAACATCCTCTCCAGAATCCGGAGCATCTCAACAAGTCGCTCC 1450195
Query 355 ATCA-AGCTATTGC-ATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTA 412
| ||| || | ||| || ||||| |||||||| || || ||||| || ||||| |
Sbjct 1450196 CCCGCAGCCGTTACCATCGGGGACCACGGCAGCTACTGTGTCTCGCGTACGTGCCCTGTT 1450255
Query 413 CGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGT 472
|||||| ||| ||||| || ||||| | || || ||||||||||||||||| ||
Sbjct 1450256 TGACTTCCAGCCTTCGGAGCCTGGCGAACTTCAATTTCGAAAAGGCGACATTATTGCTGT 1450315
Query 473 TCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTT 532
|||||||| || |||||||| |||||||||||||| || | || ||||| || || ||
Sbjct 1450316 GCTCGAGTCGGTCTACAAGGATTGGTGGAAGGGTTCACTAAGAGGGCAGACGGGAATATT 1450375
Query 533 CCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGC 592
||| || |||||||| ||||||||| ||||| || |||||||||| ||||||| ||
Sbjct 1450376 CCCGCTAAACTATGTGGAGAAGCTGTCAGATCCCACTCAGGAGGAGCTGCAGAGAGAGGC 1450435
Query 593 TCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCT 652
|| |||||||| || |||||||| |||||||||||||| ||||||||||| |||| |
Sbjct 1450436 ACACATGGAGGCTGAGGTCTTTGCTGAGATCAAGAACGTCGAGAAGCTGCTTACTCTTTT 1450495
Query 653 GAGCACTAG----TTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACC 708
||| || || | ||||| | | || ||||||||||| || || | | ||||
Sbjct 1450496 GAGTACGAGCAGCTCCGAGT-TGAATGTGAGAGACAATGAGGAAATAACGACCTTATACC 1450554
Query 709 ACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGA 768
|| ||| || | ||| | || ||| | |||||||| || || ||||| || || ||||
Sbjct 1450555 ACTCGACCCTGGCCATAAGACCCAAGCTCATCGAGCTAATAGGGAAGTACTCACAGAAGA 1450614
Query 769 AGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA------CTGATCGTGTTC- 821
| |||| | || | || || | | | ||| || | | | |
Sbjct 1450615 AAGGTA---TTACTCAGT--AGCAAAATCTAG----GTCCAAAAAAGCTAAGAGAATGCA 1450665
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
|||||| ||||| || || || ||||| |||||||| || ||| | ||||| ||| | |
Sbjct 1450666 TAGATGACTTCACACAACTGAATGAGAAATTCATCAAAGCTCGCAGAGACTATGAATCGC 1450725
Query 882 TCCTTGAAGCCTCGATGTCGCAACC 906
| | || ||||| |||||||||||
Sbjct 1450726 TATTAGAGGCCTCCATGTCGCAACC 1450750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945598779165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |