Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Umbilicaria_20pustulata_20[genbank_20GCA_5F900169345.1_202017-04-14] 3,891 sequences; 39,229,750 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq775 313 8e-82 >seq775 Length=304299 Score = 313 bits (346), Expect = 8e-82 Identities = 652/947 (69%), Gaps = 38/947 (4%) Strand=Plus/Plus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68 || || ||||| | || | |||| |||||| ||| ||||||| | | | || | Sbjct 209823 AAAGCCAAGATTTTGGAAAGGATGGCCGAATGGGCGGTGATGTTCTCGAAAGAACCGAAC 209882 Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAACTC 128 || || | ||||||||| || || |||| ||| |||| |||||| | | ||| | Sbjct 209883 CTGGGTACCATGGAGCAAGCATACATGAAGCTCAAGAGTCAAAGTAAGCGCC--CAATAC 209940 Query 129 TGGTTC---GTTGGG-AGCACTGACCAACG--TGTTGTAGACCCTAACCTGCGACCTCC- 181 ||| || ||| || || ||| || ||| | | |||| || || |||| || || Sbjct 209941 TGGATCTGTGTTAGGCAGAACTCACGCACGCTTATACTAGATCCAAATCTGCACCCGCCT 210000 Query 182 GTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCT 241 || | | ||| ||| |||||||| || ||||| || |||||||| || ||||| Sbjct 210001 GTAGCA-CCTACCAAGCGTCAGATCACCGATGTAGACCGGCAAAAGGAAGAAGAAGAGCT 210059 Query 242 ACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCC-GCCGCCAGGT 300 |||||||||||| ||| | || ||||||| | || | | ||| | | || || Sbjct 210060 ACAGATGGCGCTTGCATTGTCGATCAAGGATAA-GGCATC-AGCTGGGCAGTCGTCAACG 210117 Query 301 CCAACCAGCCGCAAG-CAAAAGCCCCACAACAATCCG---CCCCGGAACAAGA-GCAGCA 355 || | | | | || ||| | | | | |||| | | | |||||| || || Sbjct 210118 CCTAAAAACGGACAGACAACATCTGCTTCAGAATCTGGAACATCCCAACAAGCCGCGGCC 210177 Query 356 TCA-AGCTATTGC-ATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTAC 413 || ||| || | ||| || ||||| |||||||| ||||| ||||| || ||||| | Sbjct 210178 CCACAGCCGTTACCATCAGGGACCACGGCAGCTACTGTCTCTCGCGTACGTGCCCTATTT 210237 Query 414 GACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTT 473 |||||| || || || || ||||| | || || ||||| ||||||||||| || Sbjct 210238 GACTTCCAACCTTCTGAGCCTGGCGAACTCCAATTTCGAAAAGGTGACATTATTGCTGTG 210297 Query 474 CTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTC 533 |||||||| || || ||||| |||||||||||||| || |||||||| || || ||| Sbjct 210298 CTCGAGTCGGTCTATAAGGATTGGTGGAAGGGTTCACTTAAGGGACAGACGGGAATATTC 210357 Query 534 CCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCT 593 || || || ||||| ||||||||| |||||||| |||||||||| |||||||||| Sbjct 210358 CCGCTAAATTATGTGGAGAAGCTGTCAGATCCTACTCAGGAGGAGCTGCAGAGAGAAGCA 210417 Query 594 CAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTG 653 || |||||||| || || ||||| |||||||||||||| ||||| || || |||| | Sbjct 210418 CATATGGAGGCTGAGGTTTTTGCTGAGATCAAGAACGTCGAGAAACTACTTACTCTTTTA 210477 Query 654 AGCACTAG----TTCGAG-TGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACC 708 || || || | |||| || | | |||||||||||||||||||| | |||||| Sbjct 210478 AGTACGAGCACCTCCGAGCTG--AATGTGAGGGACAATGAGGAGATCACAACATTGTACC 210535 Query 709 ACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGA 768 | || | | ||| | || ||| | |||||||| || || ||||| || || |||| Sbjct 210536 ATTCAACCTTAGCTATAAGACCTAAGCTCATCGAGCTGATAGGGAAGTACTCACAGAAGA 210595 Query 769 AGGGTAAGTGGAATCTTTTACGCGAATT-TGTGTGTTG---GCCACTGATCGTGTTCCAG 824 | |||| | ||| |||||| || || ||| | | ||| || || Sbjct 210596 AAGGTATG-----TCTCGGTGCCGAATTCTGGGT-TTGAAAGGCTAAGAT-GTCGCATAG 210648 Query 825 ATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCC 884 |||| ||||| || | ||||||||||| |||||||| || | || || || | || Sbjct 210649 ATGACTTCACACAATTGAACGAGAAGTTTATCAAGGCTCGGAGAGATTATGAGTCGCTAT 210708 Query 885 TTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAA 931 | || ||||| ||||||||||| || ||||| ||| ||||||| Sbjct 210709 TAGAGGCCTCTATGTCGCAACCTGCACAGCCTCCTTACATTCGTCAA 210755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944921390145