Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq11 156 1e-34 >seq11 Length=720835 Score = 156 bits (172), Expect = 1e-34 Identities = 209/291 (72%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 365 TGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCC 424 |||| | || || || || || || ||| | | || || | ||| |||||||| || Sbjct 526475 TGCAGCAGGTACGACGGCCGCAACAGTCAGCAGAGTGCGTGGCCTGTACGACTTTGTCCC 526534 Query 425 CTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGT 484 || || | |||||| | | ||| || || ||| | ||||| || || || || || Sbjct 526535 GTCAGAGGCTGGCGAGCTCGAGTTCAAGAAGGGAGACGTCATTGCCGTGCTGGAATCCGT 526594 Query 485 GTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTA 544 ||||||||||||||| || || || || |||| ||||| ||||| |||||||| Sbjct 526595 ATACAAGGACTGGTGGCGAGGCTCCTTGAAGGGCAAGACGGGCATTTTCCCGCTCAACTA 526654 Query 545 TGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGC 604 |||||| ||||| ||||| || || ||||| | | || || |||||||| || Sbjct 526655 TGTCGAAAAGCTCACAGATCCCACTCCCGACGAGCTGCACAAGGAGGCCCAGATGGAAGC 526714 Query 605 GGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAG 655 || |||||||| |||||||||||||| ||||||||||| | |||||||| Sbjct 526715 CGAGGTCTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTCACCCTGCTGAG 526765 Score = 84.2 bits (92), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 |||| || ||||| |||||||| || ||||||||||||||||| | |||||||| | | Sbjct 527100 CAGACGACTTCACCCAGCTCAATGAAAAGTTCATCAAGGCACGAAGAGACTACGAGGCTC 527159 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 |||| ||| | || |||||||| || | |||| | |||| Sbjct 527160 TCCTGGAATCATCCATGTCGCATCCGCCTCAGCACAACTAC 527200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945575757705