Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20carpophila_20[genbank_20GCA_5F001990985.1_202017-02-09] 657 sequences; 36,917,822 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq294 403 6e-109 >seq294 Length=641530 Score = 403 bits (446), Expect = 6e-109 Identities = 651/926 (70%), Gaps = 35/926 (4%) Strand=Plus/Plus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | ||||| || ||||| |||| |||||||| || ||||| ||| |||||| Sbjct 549167 TCAAGACGAAGATACTGGAGCGCATGGAAGAATGGACAGAAATGTTTTCCAAAGACCCTG 549226 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGT-GCGTGTGATCAA 125 || | || || ||||| ||||| || |||||||| |||||||||||| | || | ||| Sbjct 549227 ATTTAGGAATAATGGAACAGGCATACATGAGGCTGAAGACACAAAGTAGAGTTTTCCCAA 549286 Query 126 CTCTGGTT--CGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGT 183 || | || ||| | | |||| || ||| || ||||| | || || | Sbjct 549287 TATTGCTGGACGAATGGATC-----CTAACGACCTGCAGATCCGAACCTACATCCCCCCT 549341 Query 184 CGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243 | || || || ||||| ||| | |||| ||| | ||| |||||| |||| |||| Sbjct 549342 CAAAGCCACAAAAGACACAGCTTTCGGATCAGGATAGACAGCGAGAAGAGCAGGAACTAC 549401 Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCC---GCCGCCAGGT 300 | ||||| || ||| | ||| | || || | || | | || | || ||| | Sbjct 549402 AAATGGCACTCGCATTGTCCATGAAAGAGAATAAGATCACGACACCACAGGCAGCCTCAT 549461 Query 301 CCAACCAGCCGCAAGCAA------AAGCCCCA----CAACAATC-CGCC-CCGGAACAAG 348 | || || || ||| || | ||| || | || || ||| || ||| Sbjct 549462 CGAATCAACCTCAATCATCGACGCAGGCCGCAGCCGCCCCAGTCTCGCAGCCTCCACAGC 549521 Query 349 AGCAGCATCAAGCTAT--TGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGC 406 ||||| || | | |||| ||||| ||||| ||||| || || | || ||||| Sbjct 549522 AGCAGACTCCACCAGCGGTGCAA--GGAACAACAGCTGCTACAGTATCGAGAGTCCGCGC 549579 Query 407 CCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTAT 466 | | | ||||||||| ||||||||| | ||||| ||||| || ||||| |||||||| || Sbjct 549580 CTTGTTCGACTTCACACCCTCGGAATCTGGCGAATTGGCATTTCGCAAGGGCGACATAAT 549639 Query 467 TGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGG 526 || || || || || |||||||||||||||||||| ||||| |||| || ||||| || Sbjct 549640 AGCAGTGCTGGAATCAGTGTACAAGGACTGGTGGAAAGGTTCATTGCGCGGGCAGACTGG 549699 Query 527 CATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAG 586 ||| || || |||||||||||||| ||| ||||||| || || | || ||||| ||| | Sbjct 549700 CATTTTTCCGCTCAACTATGTCGAAAAGTTGCAGGACCCAACAACCGAAGAGCTGGAGCG 549759 Query 587 AGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGC 646 || ||||| ||||| || ||||| ||||| |||| || || ||||||||||| || Sbjct 549760 TGAGGCTCACATGGAAGCCGAAGTGTTTGCTCAGATTGGTAATGTAGAGAAGCTGCTGGC 549819 Query 647 TCTGCTGAGCAC------TAGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTC 700 ||| |||| || || | ||| | ||| | |||||||||||||||||||| Sbjct 549820 ACTGTTGAGTACGAACGATACTGGGAGGGGCGATGTGAGGGACAATGAGGAGATCACAGA 549879 Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| |||| || |||| || |||||| | |||||||| || || |||||||| Sbjct 549880 GCTATACCACTCGACACTGGCGATTCGACCGAAGCTAATCGAGCTTATCGGGAAGTATTC 549939 Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTT 820 ||||||||| ||| || |||| ||| | | | | | |||| || | | | Sbjct 549940 GCAAAAGAAAGGTGGGTCGAAT-TTTCAACCCTACTAGAGTGTAGGGGGGCTAACAT-CA 549997 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 |||| ||||| || ||| | || |||||||| ||||| |||||||| ||||| |||| Sbjct 549998 ACAGACGATTTTACCCAGTTGAATGAGAAGTTTATCAAAGCACGCCGAGACTATGAAATG 550057 Query 881 CTCCTTGAAGCCTCGATGTCGCAACC 906 ||||| ||| |||| ||||| ||||| Sbjct 550058 CTCCTCGAATCCTCAATGTCACAACC 550083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945485415915