Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20effusa_20[genbank_20GCA_5F001901625.1_202016-12-12] 545 sequences; 40,550,085 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq72 334 2e-88 >seq72 Length=162493 Score = 334 bits (370), Expect = 2e-88 Identities = 646/935 (69%), Gaps = 40/935 (4%) Strand=Plus/Minus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | ||||| | |||||||||| || ||||| || |||||| ||| | || | Sbjct 42940 TCAAGACGAAGATATTGGAGCGTATGGAAGAGTGGACAGATATGTTCTCCAAAGATCCCG 42881 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAAC 126 || | ||||||||||||||||| || |||||||| ||||| |||||| || | ||| Sbjct 42880 ATTTGGGCATCATGGAGCAGGCATACATGAGGCTGAAGACGCAAAGTA-GTTTATCCAAT 42822 Query 127 TCTGGTTCGTTGG--GAGC-ACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGT 183 |||| | || |||| ||| || | ||| ||| || || || | || || | Sbjct 42821 TCTGCT-----GGACGAGCGACTTCTCACAGA-TTGCAGATCCCAATCTACACCCACCTT 42768 Query 184 CGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243 ||||||| || ||||| ||| | | || || | ||| |||||| |||| | | Sbjct 42767 CGAAACCACAAAAGACACAGCTATCAGATCAAGATAGACAGCGAGAAGAGCAGGAATTGC 42708 Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCC---GCCGCCAGGT 300 | ||||| || || | ||| | || || | ||| | | || || || ||| | Sbjct 42707 AAATGGCACTCGCGTTGTCCATGAAAGAGAATAAGACTGTGACACCCCAAGCAGCCTTAT 42648 Query 301 CCAACCAGCCGCAA------GCAAAAGCCCCA----CAACAATC-CGCC-CCGGAACAAG 348 | ||||| || ||| ||| | ||| || | || || ||| || || Sbjct 42647 CGAACCAACCTCAATCATCAGCACAGGCCGCAGCTGCGCCAGTCTCGCAGCCATCACCGC 42588 Query 349 AGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCC 408 ||||| || | | | | ||||| ||||| ||||| || || | || |||||| Sbjct 42587 AGCAGGCTCCACCGGCAGTACAAGGAACAACAGCGGCTACGGTGTCAAGAGTCCGCGCCT 42528 Query 409 TTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTG 468 | | ||||||||| || || ||| | ||||| ||||| ||||| || |||||||| || | Sbjct 42527 TGTTCGACTTCACACCTTCTGAATCTGGCGAATTGGCCTTCCGTAAGGGCGACATAATAG 42468 Query 469 CGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCA 528 | || || || || |||||||| ||||||||||| || || |||| |||||||| |||| Sbjct 42467 CAGTGCTAGAATCAGTGTACAAAGACTGGTGGAAAGGCTCATTGCGCGGACAGACTGGCA 42408 Query 529 TCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAG 588 | ||||| || ||||| ||||| ||| ||||||| || || | |||||||| ||| | | Sbjct 42407 TTTTCCCGCTAAACTACGTCGAAAAGTTGCAGGACCCAACGACCGAGGAGCTGGAGCGTG 42348 Query 589 AAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTC 648 | || || ||||| || ||||| ||||| | || || || || |||||| | || Sbjct 42347 AGGCACACATGGAAGCCGAAGTGTTTGCTCAAATTGGCAATGTCGAAAAGCTGTTGGCAT 42288 Query 649 TGCTGAGCACTA---GTTCG---AGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGC 702 || ||||||| | || || | ||| | ||||||| || |||||||| Sbjct 42287 TGTTGAGCACAAACGACACGGGAAGAGGCGATGTACGGGACAACGAAGAGATCACAGAAT 42228 Query 703 TGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGC 762 | |||||| |||| || |||| || ||||| |||||||| | ||||| || ||||| | Sbjct 42227 TATACCACTCGACATTGGCGATTCGACCGAAACTGATCGAGTTGATTGGGAAATATTCTC 42168 Query 763 AAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGG-CCACT-GATCGTGTT 820 | ||||| ||| ||||| | | | | | || | |||| || ||| |||| || Sbjct 42167 AGAAGAAAGGTGAGTGG-AGGTCTCAATC--ATGT-TGTGCCGGAGGACTAAATCG-GT- 42114 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 |||| || || || ||||||||||||||||| || || |||||||| || || |||| Sbjct 42113 -CAGACGACTTTACTCAGCTCAACGAGAAGTTTATAAAAGCACGCCGAGATTATGAAATG 42055 Query 881 CTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 || || ||||| |||||||| || ||| | ||||| Sbjct 42054 CTGCTAGAAGCTTCGATGTCACATCCACCACAGCC 42020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945504949275