Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Venturia_20inaequalis_20[genbank_20GCA_5F001857725.1_202016-10-31] 1,012 sequences; 55,125,376 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1011 389 1e-104 >seq1011 Length=897625 Score = 389 bits (430), Expect = 1e-104 Identities = 653/932 (70%), Gaps = 37/932 (4%) Strand=Plus/Plus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68 ||| ||||||| || ||||| |||| |||||||| ||||||||| ||| | ||||| Sbjct 526611 AAGACAAAGATACTGGAGCGCATGGAAGAATGGACTGAGATGTTCTCCAAAGATCCTGAC 526670 Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAACTC 128 | ||||| ||||| ||||| || |||||| | |||||||||||| | || || | Sbjct 526671 TTGGGCATAATGGAACAGGCATACATGAGGTTGAAGACACAAAGTAGGAATGC-CAGTAC 526729 Query 129 TGGTTCGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGTCGAAA 188 |||| || | | | ||| ||| ||| || ||||| | ||||| |||||| Sbjct 526730 TGGTAAAC---GATCGATTCCTAACAGCTTGCAGATCCGAACCTCCACCCTCCCTCGAAA 526786 Query 189 CCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTACAGATG 248 || || ||||| ||| | | || ||| ||| |||||| |||| ||||| ||| Sbjct 526787 CCGCAAAAGACACAGCTTTCAGATCAAGACAAACAGCGAGAAGAGCAGGAACTACAAATG 526846 Query 249 GCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCC---GCCGCCAGGTCCAAC 305 || || || || ||| | ||||| | | ||||| || | || |||| ||| ||| Sbjct 526847 GCACTCGCCCTGTCCATGAAGGAGAACAAGACCGCAACACCACAGGCAGCCACGTCGAAC 526906 Query 306 CAGCCGCAA------GCAAAAGCCCCA----CAACAATC-CGCC-CCGGAACAAGAGCAG 353 || || ||| ||| |||| || | || || ||| || |||| | ||| Sbjct 526907 CAACCTCAATCATCAGCACAAGCTGCAGCTGCGCCAGTCTCGCAGCCTCCACAACAACAG 526966 Query 354 CATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTAC 413 | | | | | ||||| ||||| ||||| || || | || |||||| | | | Sbjct 526967 ACCCCACCCGCAGTACAAGGAACGACAGCTGCTACAGTATCAAGAGTACGCGCCTTGTTC 527026 Query 414 GACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTT 473 || || || ||||| ||| | ||||| || | ||||| || ||||| || || || || Sbjct 527027 GATTTTACACCCTCAGAATCTGGCGAACTGTCATTCCGAAAGGGCGATATAATAGCAGTA 527086 Query 474 CTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTC 533 || || || |||| ||||||||||||||| || || |||| ||||| |||||||| ||| Sbjct 527087 CTAGAATCAGTGTTCAAGGACTGGTGGAAAGGCTCATTGCGCGGACAAACCGGCATTTTC 527146 Query 534 CCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCT 593 || ||||| ||||||||||||||||||||||| || | || ||||| || | || ||| Sbjct 527147 CCGCTCAATTATGTCGAGAAGCTGCAGGATCCAACGACTGAAGAGCTGGAACGTGAGGCT 527206 Query 594 CAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTG 653 || ||||| || || || ||||| |||| ||||||||||||||| |||| ||||| Sbjct 527207 CACATGGAAGCCGATGTGTTTGCTCAGATTGGCAACGTGGAGAAGCTGTTAGCGTTGCTG 527266 Query 654 AGCACTAGT----TCG--AGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTAC 707 ||||| | | || || | ||| | |||||||||||||||||||| ||| ||| Sbjct 527267 AGCACGAATGATACCGGCAGAGGCGATGTGAGGGACAATGAGGAGATCACAGAGCTTTAC 527326 Query 708 CACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAG 767 ||| || || |||| ||||||||||||||||| | |||||||| || ||||| ||| Sbjct 527327 CACTCAACCTTGGCGATTCGGCCGAAGTTGATCGAATTGATTGGCAAATACTCGCAGAAG 527386 Query 768 AAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGC----CACTGATCGTGTTCCA 823 || ||| | | || | | ||| | | | | || | ||| | | || || Sbjct 527387 AAAGGTTA--GCAAGC-TCTAC---ATCTCCTCTAGTGACGCAAAACT-AACATG-AACA 527438 Query 824 GATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTC 883 || || ||||| ||||| ||||| ||||||||||| ||||| || || || |||| || Sbjct 527439 GACGACTTCACCCAGCTAAACGAAAAGTTCATCAAAGCACGTCGAGATTATGAAATGCTT 527498 Query 884 CTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 || ||| |||| |||||||| || | ||||| Sbjct 527499 CTCGAATCCTCCATGTCGCATCCTCCACAGCC 527530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945423502140