Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Venturia_20inaequalis_20[genbank_20GCA_5F002148295.1_202016-10-31]
1,680 sequences; 40,142,277 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq1183 383 5e-103
>seq1183
Length=68701
Score = 383 bits (424), Expect = 5e-103
Identities = 653/934 (70%), Gaps = 37/934 (4%)
Strand=Plus/Plus
Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68
||| ||||||| || ||||| |||| |||||||| ||||||||| ||| | |||||
Sbjct 38742 AAGACAAAGATACTGGAGCGCATGGAAGAATGGACTGAGATGTTCTCCAAAGATCCTGAC 38801
Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAACTC 128
| ||||| ||||| ||||| || |||||| | |||||||||||| | || || |
Sbjct 38802 TTGGGCATAATGGAACAGGCATACATGAGGTTGAAGACACAAAGTAGGAATGC-CAGTAC 38860
Query 129 TGGTTCGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGTCGAAA 188
|||| || | | | ||| | | ||| || ||||| | ||||| ||||||
Sbjct 38861 TGGTAAAC---GATCGATTCCTAACAGCTCGCAGATCCGAACCTCCACCCTCCCTCGAAA 38917
Query 189 CCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTACAGATG 248
|| || ||||| ||| | | || ||| ||| |||||| |||| ||||| |||
Sbjct 38918 CCGCAAAAGACACAGCTTTCAGATCAAGACAAACAGCGAGAAGAGCAGGAACTACAAATG 38977
Query 249 GCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCC---GCCGCCAGGTCCAAC 305
|| || || || ||| | ||||| | | ||||| || | || |||| || |||
Sbjct 38978 GCACTCGCCCTGTCCATGAAGGAGAACAAGACCGCAACACCACAGGCAGCCACATCGAAC 39037
Query 306 CAGCCGCAA------GCAAAAGCCCCA----CAACAATC-CGCC-CCGGAACAAGAGCAG 353
|| || ||| ||| |||| || | || || ||| || |||| | |||
Sbjct 39038 CAACCTCAATCATCAGCACAAGCTGCAGCTGCGCCAGTCTCGCAGCCTCCACAACAACAG 39097
Query 354 CATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTAC 413
| | | | | ||||| ||||| ||||| || || | || |||||| | | |
Sbjct 39098 ACCCCACCCGCAGTACAAGGAACGACAGCTGCTACAGTATCAAGAGTACGCGCCTTGTTC 39157
Query 414 GACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTT 473
|| || || ||||| ||| | ||||| || | ||||| || ||||| || || || ||
Sbjct 39158 GATTTTACACCCTCAGAATCTGGCGAACTGTCATTCCGAAAGGGCGATATAATAGCAGTA 39217
Query 474 CTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTC 533
|| || || |||| ||||||||||||||| || || |||| ||||| |||||||| |||
Sbjct 39218 CTAGAATCAGTGTTCAAGGACTGGTGGAAAGGCTCATTGCGCGGACAAACCGGCATTTTC 39277
Query 534 CCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCT 593
|| ||||| ||||||||||||||||||||||| || | || ||||| || | || |||
Sbjct 39278 CCGCTCAATTATGTCGAGAAGCTGCAGGATCCAACGACTGAAGAGCTGGAACGTGAGGCT 39337
Query 594 CAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTG 653
|| ||||| || || || ||||| |||| ||||||||||||||| |||| |||||
Sbjct 39338 CACATGGAAGCCGATGTGTTTGCTCAGATTGGCAACGTGGAGAAGCTGTTAGCGTTGCTG 39397
Query 654 AGCACTAGT----TCG--AGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTAC 707
||||| | | || || | ||| | |||||||||||||||||||| ||| |||
Sbjct 39398 AGCACAAATGATACCGGCAGAGGCGATGTGAGGGACAATGAGGAGATCACAGAGCTTTAC 39457
Query 708 CACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAG 767
||| || || |||| ||||||||||||||||| | |||||||| || ||||| |||
Sbjct 39458 CACTCAACCTTGGCGATTCGGCCGAAGTTGATCGAATTGATTGGCAAATACTCGCAGAAG 39517
Query 768 AAGGGTAAGT--GGAATCTTTTACGCGAATTTGTGTGTTGGC----CACTGATCGTGTTC 821
|| ||| ||| | || | | ||| | | | | || | ||| | | ||
Sbjct 39518 AAAGGTTAGTTAGCAAGC-TCTAC---ATCTCCTCTAGTGACGCAAAACT-AACATG-AA 39571
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
|||| || ||||| ||||| ||||| ||||||||||| ||||| || || || |||| |
Sbjct 39572 CAGACGACTTCACCCAGCTAAACGAAAAGTTCATCAAAGCACGTCGAGATTATGAAATGC 39631
Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915
| || ||| |||| |||||||| || | |||||
Sbjct 39632 TTCTCGAATCCTCCATGTCGCATCCTCCACAGCC 39665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945306999600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |