Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verruconis_20gallopava_20[genbank_20GCA_5F000836295.1_202015-02-23] 367 sequences; 31,780,469 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq13 293 7e-76 >seq13 Length=734237 Score = 293 bits (324), Expect = 7e-76 Identities = 633/944 (67%), Gaps = 57/944 (6%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| ||||| || || | |||| || |||||||| |||||| | | Sbjct 581237 GCAGGTCAAGGCGAAGATTCTTGAAAGGATGGCAGAGTGGACGGAAATGTTCAAACATGA 581178 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 || ||| | || |||||||||||||| || |||||||| ||||| ||||||| || ||| Sbjct 581177 GCCAGATTTGGGAATCATGGAGCAGGCTTACATGAGGCTGAAGACTCAAAGTGTGTTTGA 581118 Query 122 -----------------TCAACTCTG------GTTCGTTGGGA-GCAC-----TGACCAA 152 || || || | ||| | || | || | |||| Sbjct 581117 CTGTTCCCCCGTCCCCTTCCTCTTTGAGCCGCGAACGTGGCGATGGACGAGGCTAACCAG 581058 Query 153 CGTGTTGTAGACCCTAACCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGAC 212 | |||||| |||||||| | || || || ||||| |||||||| ||| | |||| Sbjct 581057 GGAACTGTAGATCCTAACCTACACCCACCATCAAAACCGCAGAAGACTCAGCTGTCGGAG 580998 Query 213 TCGGACCGCCAGAAG-GAAGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGA 271 ||||| | ||| | ||||| |||||| | ||||||||||| ||||||||| | ||||| Sbjct 580997 GCGGACAGA-AGACGAGAAGAAGAGGAGTTGCAGATGGCGCTTGCACTCTCCATGAAGGA 580939 Query 272 AAGCGGGACCGAGCCATCCGCCGCCAGGTCCAACCAGCCGCAAGCAAAAGCCCCACAACA 331 ||| | ||| || | | |||| || | | |||||| | | | | ||| Sbjct 580938 CAGCAAGGCCG---CAGCAACTTCCAGTGCCTCTCCGGCGCAAGGCATCGGCTCGCAAAC 580882 Query 332 ATCCGCCCCGGAACA-AGAGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCG 390 | | || |||| | | ||| ||| || || || || || || || | Sbjct 580881 ACCTGCTGAAGAACCCACTCCTGCA-CAA-------CAA--GGCACGACGGCTGCCACAG 580832 Query 391 TCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCC 450 | || || || || || || || |||||||| || || || || || ||| | || || | Sbjct 580831 TTTCACGGGTCCGTGCGCTCTATGACTTCACCCCGTCAGAGCCAGGAGAGCTAGCCTTTC 580772 Query 451 GCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTC 510 |||| ||||| || || || || | ||||| |||||||||||||||||||||||||| | Sbjct 580771 GCAAGGGCGATATCATCGCCGTCATAGAGTCCGTGTACAAGGACTGGTGGAAGGGTTCCC 580712 Query 511 TGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCA 570 | || || || || ||||| || || || || |||||||| || ||||| || | Sbjct 580711 TCAAAGGCGCAACAGGAATATTCCCTCTAAATTACGTGGAGAAGCTACAAGATCCGACGA 580652 Query 571 AGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACG 630 || ||||| || |||||||| ||||||||| || || || | ||| || | Sbjct 580651 GAGAAGAGCTAGAAAGAGAAGCGCAGATGGAGAGCGAGGTGTTCAACCAAATCGGCAATG 580592 Query 631 TGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGAGTGCCGACGCTAGGGACAATGAGG 690 ||||||||||||| || ||||||||| || | || | ||| | | |||||||||| Sbjct 580591 TGGAGAAGCTGCTTGCGCTGCTGAGCGTTAATGACAGGGGCGATGTGCGCGACAATGAGG 580532 Query 691 AGATCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTG 750 || | || | || |||||||| || ||||| |||||| | || || || |||| Sbjct 580531 AGGTGACGGAATTATATCACAAGACCCTGAGTATACGACCGAAGCTCATTGAACTGATTG 580472 Query 751 GCAAGTATTCGCAAAAGAAGGGTAAGTG--------GAATCTTTTACGCGAATTTGTGTG 802 | ||||||||||||||||| ||| | | ||||| | ||| | || Sbjct 580471 GAAAGTATTCGCAAAAGAAAGGTTTGAGCTATTCCCCAATCTAGTCCGCACA----TGGA 580416 Query 803 TTGGCCACTGATCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCA 862 | || || | || || ||| || | || || ||||||||| |||||||| || Sbjct 580415 ATCGCTGCTAACCGCAGTCTAGACGACATGACACAACTCAACGAGCGCTTCATCAAAGCT 580356 Query 863 CGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACC 906 || |||||||||||||| ||||| || || || ||||| || || Sbjct 580355 CGGCGCGACTACGAAACTCTCCTCGAGGCATCCATGTCACATCC 580312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945535993365