Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08-
07] 28,081 sequences; 99,189,222 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq4113 214 6e-52
seq21195 197 4e-47
seq21662 96.9 1e-16
>seq4113
Length=170745
Score = 214 bits (236), Expect = 6e-52
Identities = 412/614 (67%), Gaps = 68/614 (11%)
Strand=Plus/Plus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| ||||| || || |||||||| | || ||||| || | |||||| ||| || |
Sbjct 10660 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTCGACTTTGTGCCGTCTG 10719
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || || ||| ||| ||| || ||||| | |||||||| || ||||| || ||||
Sbjct 10720 AGCCTGGTGAGCTGGAATTCAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCCGTCTACA 10779
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
|||| |||||| || || || || ||||||||||||| || |||||||| ||||
Sbjct 10780 AGGATTGGTGGCGCGGATCCCTCAAGGGCAAGACCGGCATCTTTCCTCTCAACTACGTCG 10839
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
|||||| || || || ||| ||||||| | | || || ||||||||||| ||||
Sbjct 10840 GGAAGCTTACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCACAGATGGAGGCTGAAG 10899
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTC----G 665
| || || ||||| ||||| || ||||||||||| | ||||||||||| || |
Sbjct 10900 TGTTCGCTGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC--GTCCAACAC 10957
Query 666 AGTGCCGACGCTAG-GGACAATGAGGA--------------------------------- 691
|| ||| | | | ||||||||||||
Sbjct 10958 AGCGCCCAAGGAGGAGGACAATGAGGAGATCTCGGTAAGTCTGGCGAAGAGGAGACAGCT 11017
Query 692 ---GATCACTTCGCTG-----------------TACCACAAGACAGTGTCGATACGGCCG 731
|||||| ||||| |||||| |||| | | || |||||
Sbjct 11018 CATGATCACGCCGCTGACCGCAACAAGAAACTCTACCACCAGACCCTCGCTATCCGGCCA 11077
Query 732 AAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGC 791
|| |||||| ||||||||| ||||| ||||| |||||||||| || ||| | ||
Sbjct 11078 AAATTGATCAAGCTCATTGAGAAGTACTCGCAGAAGAAGGGTATGT-ACATCACAGA-GC 11135
Query 792 GAATTTGT-GTGTTGGCCACTGA--TCGTGTTCCAGATGATTTCACGCAGCTCAACGAGA 848
|| | | ||| ||||| |||| | |||| || || |||||||||||||| |
Sbjct 11136 CTGTTCCTCATATTG---ACTGACCCCGTGCTTCAGACGACTTTACGCAGCTCAACGAAA 11192
Query 849 AGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAG 908
||||||||||||| |||||||| ||||| | || || || |||| ||||| || |||
Sbjct 11193 AGTTCATCAAGGCGCGCCGCGATTACGAGGCTCTTCTAGAGTCCTCCATGTCTCACCCAC 11252
Query 909 CGCAGCCCGGCTAC 922
| |||||| |||||
Sbjct 11253 CTCAGCCCAGCTAC 11266
>seq21195
Length=369128
Score = 197 bits (218), Expect = 4e-47
Identities = 217/289 (75%), Gaps = 0/289 (0%)
Strand=Plus/Minus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| ||||| || || |||||||| | || ||||| || | ||||| ||| || |
Sbjct 45285 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTTGACTTTGTGCCGTCCG 45226
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || || ||| ||| ||| || ||||| | |||||||| || |||||||| ||||
Sbjct 45225 AGCCTGGTGAGCTGGATTTTAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCTGTCTACA 45166
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
|||| |||||| || || || || |||| |||||||| || |||||||| ||||
Sbjct 45165 AGGATTGGTGGCGCGGGTCCCTCAAGGGCAAGACGGGCATCTTTCCTCTCAACTACGTCG 45106
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
|||||||| || || || ||| ||||||| | | || || ||||||||||| ||||
Sbjct 45105 AGAAGCTGACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCGCAGATGGAGGCTGAAG 45046
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
| || |||||||| ||||| || ||||||||||| | |||||||||||
Sbjct 45045 TGTTCGCGGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC 44997
Score = 113 bits (124), Expect = 1e-21
Identities = 166/229 (72%), Gaps = 12/229 (5%)
Strand=Plus/Minus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| |||||| |||| | | || || || || |||||| ||||||||| ||||| ||
Sbjct 44898 GCTCTACCACCAGACCCTCGCTATCCGACCAAAATTGATCAAGCTCATTGAGAAGTACTC 44839
Query 761 GCAAAAGAAGGGTAAGTGGA-ATCTTTTACGCGAATTTGTGTGT----TGGCCACTGATC 815
||| |||||||||| || | ||| | || || || | || ||||| |
Sbjct 44838 GCAGAAGAAGGGTA--TGCACATCACAGA-GCCTGTTCCAGTATCACATGT--ACTGACC 44784
Query 816 --GTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873
||| | |||| || || |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 44783 CCGTGCTGCAGACGACTTTACGCAGCTCAACGAAAAGTTCATCAAGGCGCGCCGCGATTA 44724
Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
||| | || || || |||| ||||| || ||| | |||||| |||||
Sbjct 44723 CGAGGCTCTTCTAGAGTCCTCCATGTCTCACCCACCTCAGCCCAGCTAC 44675
>seq21662
Length=671
Score = 96.9 bits (106), Expect = 1e-16
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
|||| || || |||||||||||||| |||||||||||||| |||||||| ||||| | |
Sbjct 671 CAGACGACTTTACGCAGCTCAACGAAAAGTTCATCAAGGCGCGCCGCGATTACGAGGCTC 612
Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| || || |||| ||||| || ||| | |||||| |||||
Sbjct 611 TTCTAGAGTCCTCCATGTCTCACCCACCTCAGCCCAGCTAC 571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15940702533195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |