Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268145.1_202015-08- 07] 28,081 sequences; 99,189,222 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq4113 214 6e-52 seq21195 197 4e-47 seq21662 96.9 1e-16 >seq4113 Length=170745 Score = 214 bits (236), Expect = 6e-52 Identities = 412/614 (67%), Gaps = 68/614 (11%) Strand=Plus/Plus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| ||||| || || |||||||| | || ||||| || | |||||| ||| || | Sbjct 10660 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTCGACTTTGTGCCGTCTG 10719 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || || ||| ||| ||| || ||||| | |||||||| || ||||| || |||| Sbjct 10720 AGCCTGGTGAGCTGGAATTCAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCCGTCTACA 10779 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| || || || || ||||||||||||| || |||||||| |||| Sbjct 10780 AGGATTGGTGGCGCGGATCCCTCAAGGGCAAGACCGGCATCTTTCCTCTCAACTACGTCG 10839 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 |||||| || || || ||| ||||||| | | || || ||||||||||| |||| Sbjct 10840 GGAAGCTTACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCACAGATGGAGGCTGAAG 10899 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTC----G 665 | || || ||||| ||||| || ||||||||||| | ||||||||||| || | Sbjct 10900 TGTTCGCTGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC--GTCCAACAC 10957 Query 666 AGTGCCGACGCTAG-GGACAATGAGGA--------------------------------- 691 || ||| | | | |||||||||||| Sbjct 10958 AGCGCCCAAGGAGGAGGACAATGAGGAGATCTCGGTAAGTCTGGCGAAGAGGAGACAGCT 11017 Query 692 ---GATCACTTCGCTG-----------------TACCACAAGACAGTGTCGATACGGCCG 731 |||||| ||||| |||||| |||| | | || ||||| Sbjct 11018 CATGATCACGCCGCTGACCGCAACAAGAAACTCTACCACCAGACCCTCGCTATCCGGCCA 11077 Query 732 AAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGC 791 || |||||| ||||||||| ||||| ||||| |||||||||| || ||| | || Sbjct 11078 AAATTGATCAAGCTCATTGAGAAGTACTCGCAGAAGAAGGGTATGT-ACATCACAGA-GC 11135 Query 792 GAATTTGT-GTGTTGGCCACTGA--TCGTGTTCCAGATGATTTCACGCAGCTCAACGAGA 848 || | | ||| ||||| |||| | |||| || || |||||||||||||| | Sbjct 11136 CTGTTCCTCATATTG---ACTGACCCCGTGCTTCAGACGACTTTACGCAGCTCAACGAAA 11192 Query 849 AGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAG 908 ||||||||||||| |||||||| ||||| | || || || |||| ||||| || ||| Sbjct 11193 AGTTCATCAAGGCGCGCCGCGATTACGAGGCTCTTCTAGAGTCCTCCATGTCTCACCCAC 11252 Query 909 CGCAGCCCGGCTAC 922 | |||||| ||||| Sbjct 11253 CTCAGCCCAGCTAC 11266 >seq21195 Length=369128 Score = 197 bits (218), Expect = 4e-47 Identities = 217/289 (75%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| ||||| || || |||||||| | || ||||| || | ||||| ||| || | Sbjct 45285 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTTGACTTTGTGCCGTCCG 45226 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || || ||| ||| ||| || ||||| | |||||||| || |||||||| |||| Sbjct 45225 AGCCTGGTGAGCTGGATTTTAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCTGTCTACA 45166 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| || || || || |||| |||||||| || |||||||| |||| Sbjct 45165 AGGATTGGTGGCGCGGGTCCCTCAAGGGCAAGACGGGCATCTTTCCTCTCAACTACGTCG 45106 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 |||||||| || || || ||| ||||||| | | || || ||||||||||| |||| Sbjct 45105 AGAAGCTGACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCGCAGATGGAGGCTGAAG 45046 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 | || |||||||| ||||| || ||||||||||| | ||||||||||| Sbjct 45045 TGTTCGCGGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC 44997 Score = 113 bits (124), Expect = 1e-21 Identities = 166/229 (72%), Gaps = 12/229 (5%) Strand=Plus/Minus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| |||| | | || || || || |||||| ||||||||| ||||| || Sbjct 44898 GCTCTACCACCAGACCCTCGCTATCCGACCAAAATTGATCAAGCTCATTGAGAAGTACTC 44839 Query 761 GCAAAAGAAGGGTAAGTGGA-ATCTTTTACGCGAATTTGTGTGT----TGGCCACTGATC 815 ||| |||||||||| || | ||| | || || || | || ||||| | Sbjct 44838 GCAGAAGAAGGGTA--TGCACATCACAGA-GCCTGTTCCAGTATCACATGT--ACTGACC 44784 Query 816 --GTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 ||| | |||| || || |||||||||||||| |||||||||||||| |||||||| || Sbjct 44783 CCGTGCTGCAGACGACTTTACGCAGCTCAACGAAAAGTTCATCAAGGCGCGCCGCGATTA 44724 Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 ||| | || || || |||| ||||| || ||| | |||||| ||||| Sbjct 44723 CGAGGCTCTTCTAGAGTCCTCCATGTCTCACCCACCTCAGCCCAGCTAC 44675 >seq21662 Length=671 Score = 96.9 bits (106), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 |||| || || |||||||||||||| |||||||||||||| |||||||| ||||| | | Sbjct 671 CAGACGACTTTACGCAGCTCAACGAAAAGTTCATCAAGGCGCGCCGCGATTACGAGGCTC 612 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || || |||| ||||| || ||| | |||||| ||||| Sbjct 611 TTCTAGAGTCCTCCATGTCTCACCCACCTCAGCCCAGCTAC 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15940702533195