Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08- 07] 38,382 sequences; 100,520,033 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq15557 197 4e-47 seq33740 96.9 1e-16 >seq15557 Length=396644 Score = 197 bits (218), Expect = 4e-47 Identities = 217/289 (75%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| ||||| || || |||||||| | || ||||| || | ||||| ||| || | Sbjct 219740 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTTGACTTTGTGCCGTCCG 219681 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || || ||| ||| ||| || ||||| | |||||||| || |||||||| |||| Sbjct 219680 AGCCTGGTGAGCTGGATTTTAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCTGTCTACA 219621 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| || || || || |||| |||||||| || |||||||| |||| Sbjct 219620 AGGATTGGTGGCGCGGGTCCCTCAAGGGCAAGACGGGCATCTTTCCTCTCAACTACGTCG 219561 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 |||||||| || || || ||| ||||||| | | || || ||||||||||| |||| Sbjct 219560 AGAAGCTGACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCGCAGATGGAGGCTGAAG 219501 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 | || |||||||| ||||| || ||||||||||| | ||||||||||| Sbjct 219500 TGTTCGCGGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC 219452 Score = 188 bits (208), Expect = 2e-44 Identities = 242/331 (73%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| ||||| || || |||||||| | || ||||| || | |||||| ||| || | Sbjct 273512 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTCGACTTTGTGCCGTCTG 273453 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || || ||| ||| ||| || ||||| | |||||||| || ||||| || |||| Sbjct 273452 AGCCTGGTGAGCTGGAATTCAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCCGTCTACA 273393 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| || || || || ||||||||||||| || |||||||| |||| Sbjct 273392 AGGATTGGTGGCGCGGATCCCTCAAGGGCAAGACCGGCATCTTTCCTCTCAACTACGTCG 273333 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 |||||| || || || ||| ||||||| | | || || ||||||||||| |||| Sbjct 273332 GGAAGCTTACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCACAGATGGAGGCTGAAG 273273 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTC----G 665 | || || ||||| ||||| || ||||||||||| | ||||||||||| || | Sbjct 273272 TGTTCGCTGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC--GTCCAACAC 273215 Query 666 AGTGCCGACGCTAG-GGACAATGAGGAGATC 695 || ||| | | | |||||||||||||||| Sbjct 273214 AGCGCCCAAGGAGGAGGACAATGAGGAGATC 273184 >seq33740 Length=20494 Score = 96.9 bits (106), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 |||| || || |||||||||||||| |||||||||||||| |||||||| ||||| | | Sbjct 19824 CAGACGACTTTACGCAGCTCAACGAAAAGTTCATCAAGGCGCGCCGCGATTACGAGGCTC 19883 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || || |||| ||||| || ||| | |||||| ||||| Sbjct 19884 TGCTAGAGTCCTCAATGTCACACCCACCTCAGCCCAGCTAC 19924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15938905987290