Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Verticillium_20longisporum_20[genbank_20GCA_5F001268165.1_202015-08-
07] 38,382 sequences; 100,520,033 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq15557 197 4e-47
seq33740 96.9 1e-16
>seq15557
Length=396644
Score = 197 bits (218), Expect = 4e-47
Identities = 217/289 (75%), Gaps = 0/289 (0%)
Strand=Plus/Minus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| ||||| || || |||||||| | || ||||| || | ||||| ||| || |
Sbjct 219740 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTTGACTTTGTGCCGTCCG 219681
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || || ||| ||| ||| || ||||| | |||||||| || |||||||| ||||
Sbjct 219680 AGCCTGGTGAGCTGGATTTTAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCTGTCTACA 219621
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
|||| |||||| || || || || |||| |||||||| || |||||||| ||||
Sbjct 219620 AGGATTGGTGGCGCGGGTCCCTCAAGGGCAAGACGGGCATCTTTCCTCTCAACTACGTCG 219561
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
|||||||| || || || ||| ||||||| | | || || ||||||||||| ||||
Sbjct 219560 AGAAGCTGACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCGCAGATGGAGGCTGAAG 219501
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
| || |||||||| ||||| || ||||||||||| | |||||||||||
Sbjct 219500 TGTTCGCGGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC 219452
Score = 188 bits (208), Expect = 2e-44
Identities = 242/331 (73%), Gaps = 7/331 (2%)
Strand=Plus/Minus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| ||||| || || |||||||| | || ||||| || | |||||| ||| || |
Sbjct 273512 CTGGCACCACGGCGGCGACCGTCTCGAGGGTGCGCGCGCTCTTCGACTTTGTGCCGTCTG 273453
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || || ||| ||| ||| || ||||| | |||||||| || ||||| || ||||
Sbjct 273452 AGCCTGGTGAGCTGGAATTCAAGAAGGGCGATGTCATTGCGGTCCTAGAGTCCGTCTACA 273393
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
|||| |||||| || || || || ||||||||||||| || |||||||| ||||
Sbjct 273392 AGGATTGGTGGCGCGGATCCCTCAAGGGCAAGACCGGCATCTTTCCTCTCAACTACGTCG 273333
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
|||||| || || || ||| ||||||| | | || || ||||||||||| ||||
Sbjct 273332 GGAAGCTTACCGACCCGACACCGGACGAGCTCGCGCGGGAGGCACAGATGGAGGCTGAAG 273273
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTC----G 665
| || || ||||| ||||| || ||||||||||| | ||||||||||| || |
Sbjct 273272 TGTTCGCTGAGATTAAGAATGTCGAGAAGCTGCTCACCCTGCTGAGCAC--GTCCAACAC 273215
Query 666 AGTGCCGACGCTAG-GGACAATGAGGAGATC 695
|| ||| | | | ||||||||||||||||
Sbjct 273214 AGCGCCCAAGGAGGAGGACAATGAGGAGATC 273184
>seq33740
Length=20494
Score = 96.9 bits (106), Expect = 1e-16
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
|||| || || |||||||||||||| |||||||||||||| |||||||| ||||| | |
Sbjct 19824 CAGACGACTTTACGCAGCTCAACGAAAAGTTCATCAAGGCGCGCCGCGATTACGAGGCTC 19883
Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| || || |||| ||||| || ||| | |||||| |||||
Sbjct 19884 TGCTAGAGTCCTCAATGTCACACCCACCTCAGCCCAGCTAC 19924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15938905987290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |