Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1908 241 4e-60 >seq1908 Length=268439 Score = 241 bits (266), Expect = 4e-60 Identities = 389/552 (70%), Gaps = 23/552 (4%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || ||||| || || ||| | | || || || || ||||||||||| || | || Sbjct 190308 GGGACGACAGCTGCAACTGTCAGCAGGGTGCGTGCTCTGTACGACTTCACACCAACCGAG 190367 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 | |||||| ||||||||||||| |||||| ||||| || | || ||||| |||||| Sbjct 190368 GCGGGCGAGCTGGCTTTCCGCAAGAACGACATAATTGCTGTATTGGAATCTGTATACAAG 190427 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||||| ||| |||| |||||||| ||||| ||||| |||||||| || || Sbjct 190428 GACTGGTGGAAAGGTAGCTTGCGCGGACAGACTGGCATTTTCCCGCTCAACTACGTTGAA 190487 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| || || || || || || ||| | ||| | || || ||||||||| | || || Sbjct 190488 AAGCTACAAGACCCCACGAAAGACGAGATGGAGCGCGATGCGCAGATGGAGTCTGAGGTA 190547 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAG-TTCGAG--- 667 || | ||| ||||||| |||||||||||| | || |||| ||| | | |||| Sbjct 190548 TTCGGCGAGGTCAAGAATGTGGAGAAGCTGTTGGCGTTGCTCAGCGTTGGCGGCGAGGCT 190607 Query 668 TGCCGACG-CTAGG-------GACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTG 719 || |||| | ||| || | |||||||||| |||| || || || Sbjct 190608 GGCGGACGTCGAGGCGAGCGCGAGGAGGAGGAGATCAGCGAATTGTATCAGCGCACTCTG 190667 Query 720 TCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGG 779 || ||||| ||| | || ||||| |||| || ||||||||| ||||||||| ||| Sbjct 190668 AGCATCCGGCCAAAGCTCATTGAGCTGATTGCCAGGTATTCGCAGAAGAAGGGTGAGTAC 190727 Query 780 AA-TCTTTTACGCGAATTTGTGTGTTGGCC--ACT--GATCGTGTTCCAGATGATTTCAC 834 || ||| ||| ||| ||| || || | | ||| |||| || || || Sbjct 190728 AAGTCT----GGCGTTCTTGAAGATTGCCCGTGCTAACAACCTGT--CAGACGACTTTAC 190781 Query 835 GCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTC 894 ||||| ||||| |||||||||||||| || || || |||||| | || || ||| | || Sbjct 190782 ACAGCTGAACGAAAAGTTCATCAAGGCGCGGCGAGATTACGAAGCACTGCTGGAATCGTC 190841 Query 895 GATGTCGCAACC 906 ||||| ||||| Sbjct 190842 CATGTCTCAACC 190853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945010511100