Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Scheffersomyces_20shehatae_20[genbank_20GCA_5F002118035.1_202017-03- 24] 10 sequences; 17,147,083 total letters Query= NC_003745.1 Length=4579 Score E Sequences producing significant alignments: (Bits) Value seq1 212 2e-51 >seq1 Length=3488706 Score = 212 bits (234), Expect = 2e-51 Identities = 619/935 (66%), Gaps = 24/935 (3%) Strand=Plus/Minus Query 3032 AACAGATGGGAGTGGGTTCCAGGTGGCAGTGTCCACTCTCAATACGAAGAAGACAACGAT 3091 || |||||||| ||||| || || |||||||| ||||| || ||| ||||| | Sbjct 1799441 AATAGATGGGAATGGGTGCCTGGAGGCAGTGTACACTCACAGTACATTGAAGATGATCCC 1799382 Query 3092 TATATCTATCCTGGTCAGTATACTAGGAACAAGTTCATAACTGTTAACAAAATGCCCAAA 3151 || || | || |||| | | || |||||| |||| | || | ||||| ||| Sbjct 1799381 TACATAATTAAAGGGTTGTATTCCCGAAATAAGTTCGTAACATTGAATATGATGCCAAAA 1799322 Query 3152 CACAAAATATCTAGA-ATGAT--AGCATCACCGCCTGAGGTACGAGCTTGGACGTCGACG 3208 ||||| | || || | || | | || || || || | || ||||| || || Sbjct 1799321 GGGAAAAT--CGAGTCATTCTTCAGGAGCCCC-CCGGAAGTTAGGGCATGGACTTCCACC 1799265 Query 3209 AAGTACGAATGGGGCAAGCAACGTGCTATCTACGGGACGGATCTACGAAGTACACTGATA 3268 ||||| || ||||||||||| ||||| || || || || ||||| |||||||| | ||| Sbjct 1799264 AAGTATGAGTGGGGCAAGCAGCGTGCCATATATGGTACTGATCTCCGAAGTACTGTCATA 1799205 Query 3269 ACTAACTTTGCAATGTTCAGGTGCGAGGATGTTCTCACTCACAAGTTCCCAGTAGGCGAC 3328 | || || || |||||||| |||||||| || | || | ||| || | || || Sbjct 1799204 AGCAATTTCGCGATGTTCAGATGCGAGGAATCCCTTAAGCATATGTTTCCGATCGGAGAA 1799145 Query 3329 CAGGCAGAGGC-AGCAAAGGTGCACAAACGG-GTGAACATGATGCTGGACGG---TGCCT 3383 ||||| || || || ||| || || ||| || || ||| ||| || | || || | Sbjct 1799144 CAGGCCGAAGCGAGTAAA-GTTCATAAAAGGATTGGCCAT-ATGTTGAATGGATATGAC- 1799088 Query 3384 CTAGTTTCTGCTTCGATTATGATGACTTCAATTCTCAGCATTCAATAGCTAGTATGTATA 3443 || || || || |||||||| || || ||||| ||||||||||| || ||| | Sbjct 1799087 --AGCTTTTGTTTTGATTATGACGATTTTAATTCCCAGCATTCAATCACTTCCATGAAAG 1799030 Query 3444 CGGTTTTGTGCGCTTTCAGGGACACATTTAGTC--GCAACATGTCTGATGAACAAGCAGA 3501 | || ||| ||||| |||| || || || || | |||||| | | |||| || Sbjct 1799029 CTGTCTTGAAAGCTTTTTTGGACGCA--TACTCAAGCGATATGTCTCAAGCACAAAAGGA 1798972 Query 3502 GGCGATGAACTGGGTGTGTGAGTCCGTCAGACA-CATGTGGGTACTAGATCCTGATACCA 3560 || |||| ||| | | || || |||| |||| | || ||||| ||| || Sbjct 1798971 AGCAATGATATGGACAATTAATTCGGT-GGACAGAATGTTCGCTCTTGATCCAAATA-CA 1798914 Query 3561 AGGA-GTGGTACAGACTACAAGGTACATTACTGTCAGGATGGCGGTTAACCACATTTATG 3619 || | |||||| ||||| | || || || || || || ||||| || || || || ||| Sbjct 1798913 AGCATGTGGTATAGACTTAATGGGACGTTGCTATCGGGCTGGCGCTTGACTACTTTCATG 1798854 Query 3620 AACACTGTGCTAAACTGGGCGTATATGAAATTAGCTGGCGTATTTGATCTGGATGACGTT 3679 ||||| || | |||||||| |||||| | | ||||| | ||||| | || | || Sbjct 1798853 AACACGGTTTTGAACTGGGCATATATGGACATTGCTGGAGCTTTTGACGTTGAAGGATTT 1798794 Query 3680 CAAGACTCGGTACACAACGGTGATGATGTTATGATTAGTCTCAACCGCGTGAGCACAGCA 3739 || || || || || || || ||||||||||| || | || | | |||| Sbjct 1798793 TCGGATTCTGTTCATAATGGAGACGATGTTATGATCAGCTTGAATACAATCGGTGCAGCT 1798734 Query 3740 GTAAGAATAATGGACGCTATGCACCGGATAAATGCGCGAGCACAGCCGGCGAAGTGTAAC 3799 || | |||||| | ||| | |||||||| | ||||| | || |||||| Sbjct 1798733 GTTAAGATAATGCAAAAAATGAAAGAAATAAATGCAAGGGCACAAGTTACCAAATGTAAC 1798674 Query 3800 TTGTTTTCGATAAGTGAATTTCTGAGGGTAGAACACGGTATGAGCGGAGGCGATGGTCTT 3859 | |||| |||||||||||| | || || ||||| || |||| || ||||| | Sbjct 1798673 ATTCTTTCAATAAGTGAATTTTTAAGAGTCGAACATGGAATGAAGGGGCATGATGGGTTA 1798614 Query 3860 GGGGCTCAGTACTTAAGTAGGTCTTGTGCTACTCTTGTACACAGTAGGATTGAGTCTAAC 3919 || || || ||| | | || || ||||| || | || ||||| || ||||| || Sbjct 1798613 GGAGCGCAATACCTTACCAGATCATGTGCAACGATCACTCATAGTAGAATAGAGTCGAAT 1798554 Query 3920 GAACCACTGTCAGTAGTACGAGTTATGGAAGCAGA 3954 || ||| | ||||| | ||| | || || ||||| Sbjct 1798553 GAGCCAATTTCAGTTATTCGATTGATTGAGGCAGA 1798519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14540798409600