Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 203 1e-48
>seq3469
Length=4014
Score = 203 bits (224), Expect = 1e-48
Identities = 384/557 (69%), Gaps = 25/557 (4%)
Strand=Plus/Minus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| || || || || || || |||||| || || |||||||| || || ||||
Sbjct 3979 CTGGGACAACTGCTGCGACTGTGAGTCGCGTTAAAGCGCTCTACGACTTTACACCATCGG 3920
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || || ||| |||| ||| || ||| || ||||| || | ||| ||| ||||
Sbjct 3919 AGCCTGGAGAGCTGGCCTTCAAGAAGAACGATATCATTGCAGTGTTGGAGAGTGTCTACA 3860
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
| || ||||||||||| |||||| |||||||| ||||| ||||| | ||||| || |
Sbjct 3859 AAGATTGGTGGAAGGGAAGTCTGCGAGGACAGACTGGCATTTTCCCATTGAACTACGTGG 3800
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
||||||||||||| | |||||||| ||||| ||| | || ||||| |||||| ||||||
Sbjct 3799 AGAAGCTGCAGGACGCGACCAAGGAAGAGCTAGAGCGCGACGCTCAAATGGAGTCGGAAG 3740
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT--AGTTCG-A 666
| || | ||| | | || |||||| |||| || || || ||| | || | | |
Sbjct 3739 TATTCGGTGAGGTGCGCAGTGTTGAGAAGTTGCTTGCACTTCTCAGCGTTGAAGGTGGAA 3680
Query 667 GT-GCCGAC---GCTA--GGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTGT 720
|| || ||| || | | || | || |||||| | | ||||||| || ||
Sbjct 3679 GTGGCAGACGGGGCGAGCGTGAGGAAGATGAGATCGCAGAGTTGTACCAGCGTACTTTGA 3620
Query 721 CGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGA 780
|| || ||||||||| | ||| | ||||| || || ||||| |||||||||| || |
Sbjct 3619 GCATCCGACCGAAGTTGGTAGAGTTGATTGGGAAATACTCGCAGAAGAAGGGTATGTTTA 3560
Query 781 A--------TCTT--TTACGCGAATTTGTGTGTTGGCCACTGATCGTG-TTCCAGATGAT 829
| |||| | || | | || | ||| | | || | |||| ||
Sbjct 3559 AGCCGATGGTCTTGACAATGCTCAATCAGGTTAT----ACT-AACATGCATTCAGACGAC 3505
Query 830 TTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAA 889
||||| ||||| |||||||||||||||||||| | | ||||| || | |||||||||
Sbjct 3504 TTCACCCAGCTGAACGAGAAGTTCATCAAGGCCAGGAGAGACTATGAGGCGCTCCTTGAA 3445
Query 890 GCCTCGATGTCGCAACC 906
|||| ||||| || ||
Sbjct 3444 TCCTCCATGTCACAGCC 3428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15941427360375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |