Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq3469 203 1e-48 >seq3469 Length=4014 Score = 203 bits (224), Expect = 1e-48 Identities = 384/557 (69%), Gaps = 25/557 (4%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || || || |||||| || || |||||||| || || |||| Sbjct 3979 CTGGGACAACTGCTGCGACTGTGAGTCGCGTTAAAGCGCTCTACGACTTTACACCATCGG 3920 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || || ||| |||| ||| || ||| || ||||| || | ||| ||| |||| Sbjct 3919 AGCCTGGAGAGCTGGCCTTCAAGAAGAACGATATCATTGCAGTGTTGGAGAGTGTCTACA 3860 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 | || ||||||||||| |||||| |||||||| ||||| ||||| | ||||| || | Sbjct 3859 AAGATTGGTGGAAGGGAAGTCTGCGAGGACAGACTGGCATTTTCCCATTGAACTACGTGG 3800 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||||||||||| | |||||||| ||||| ||| | || ||||| |||||| |||||| Sbjct 3799 AGAAGCTGCAGGACGCGACCAAGGAAGAGCTAGAGCGCGACGCTCAAATGGAGTCGGAAG 3740 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT--AGTTCG-A 666 | || | ||| | | || |||||| |||| || || || ||| | || | | | Sbjct 3739 TATTCGGTGAGGTGCGCAGTGTTGAGAAGTTGCTTGCACTTCTCAGCGTTGAAGGTGGAA 3680 Query 667 GT-GCCGAC---GCTA--GGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTGT 720 || || ||| || | | || | || |||||| | | ||||||| || || Sbjct 3679 GTGGCAGACGGGGCGAGCGTGAGGAAGATGAGATCGCAGAGTTGTACCAGCGTACTTTGA 3620 Query 721 CGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGA 780 || || ||||||||| | ||| | ||||| || || ||||| |||||||||| || | Sbjct 3619 GCATCCGACCGAAGTTGGTAGAGTTGATTGGGAAATACTCGCAGAAGAAGGGTATGTTTA 3560 Query 781 A--------TCTT--TTACGCGAATTTGTGTGTTGGCCACTGATCGTG-TTCCAGATGAT 829 | |||| | || | | || | ||| | | || | |||| || Sbjct 3559 AGCCGATGGTCTTGACAATGCTCAATCAGGTTAT----ACT-AACATGCATTCAGACGAC 3505 Query 830 TTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAA 889 ||||| ||||| |||||||||||||||||||| | | ||||| || | ||||||||| Sbjct 3504 TTCACCCAGCTGAACGAGAAGTTCATCAAGGCCAGGAGAGACTATGAGGCGCTCCTTGAA 3445 Query 890 GCCTCGATGTCGCAACC 906 |||| ||||| || || Sbjct 3444 TCCTCCATGTCACAGCC 3428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15941427360375