Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007740.1 Length=1870 Score E Sequences producing significant alignments: (Bits) Value seq1 453 1e-124 >seq1 Length=5856339 Score = 453 bits (502), Expect = 1e-124 Identities = 489/642 (76%), Gaps = 8/642 (1%) Strand=Plus/Minus Query 1223 CTAACCTTGCTAGGTATCACGTTGGTAATTCATGTCGTATTACTGAAAGTTCAGTGCTTG 1282 || || | || || ||||||||||||||||| ||||| || || |||||||| | |||| Sbjct 1197670 CTTACGTCGCAAGATATCACGTTGGTAATTCCTGTCGCATAACGGAAAGTTCGATTCTTG 1197611 Query 1283 AGTTACCTGTAGGTGACGAGACTCGTTACTTCAAACCACTCAAGTGTTCTGGACCATATG 1342 |||| || ||||| || ||||| || || ||||| || | ||||| || ||||| || | Sbjct 1197610 AGTTGCCCGTAGGCGATGAGACCCGATATTTCAAGCCGTTGAAGTGCTCGGGACCGTACG 1197551 Query 1343 CCATATTCGAACGATTACCATGTGAGAAGGATTATCGTGTTAACGGCCTACTCCATCATT 1402 | ||||||||||| |||| |||||||| ||||| || |||||| | ||||| || || | Sbjct 1197550 CAATATTCGAACGCCTACCGTGTGAGAATGATTACCGAGTTAACAGGCTACTGCACCACT 1197491 Query 1403 TTGGAGTTGTTCCTATAACATTAGTTCGTGACATAGTCGAGATTGAACCCATAATGGAGG 1462 ||||||| ||||| | || |||| ||||||||||| || || || ||||| ||||| | Sbjct 1197490 TTGGAGTGGTTCCGGTTACTCTAGTCCGTGACATAGTTGAAATCGAGCCCATTATGGAAG 1197431 Query 1463 ATTATTTTATCAGTGGCCCAGTCGGACCGTCCATTACGTGCCTTATGAAAACATACGCTT 1522 | || || || ||||| || || |||||||| || || ||| | |||||||| || || | Sbjct 1197430 ACTACTTCATTAGTGGTCCCGTTGGACCGTCAATCACTTGCTTGATGAAAACGTATGCCT 1197371 Query 1523 TAAATCATGTGGAAATAGTATTTGGAGAGAAGGGACTATATGTTAGACCGACCGGATCTA 1582 ||| || ||||| || ||||||||||| || ||| | || ||||||| || || || | Sbjct 1197370 TAAGACAAGTGGAGATTGTATTTGGAGATAAAGGATTGTACATTAGACCCACTGGGTCCA 1197311 Query 1583 AAGATCTGTCTAAAACCGATGACTGTTGTCGTCAAGCCTTTGCTCTAAACAATGAACGAA 1642 | ||| | ||||||| ||||| ||||||||| | |||||||| | | ||||||||||| Sbjct 1197310 AGGATTTTTCTAAAATTGATGATTGTTGTCGTAATGCCTTTGCCTTGAGCAATGAACGAA 1197251 Query 1643 CCAGATGTCACAAACAACTTAAACCAGGCAAACGTAACAAGAAGTCTACCTCACGGAATA 1702 ||||||| || |||||||||||||||| ||||| | ||||| | |||| | |||| Sbjct 1197250 CCAGATGCCATAAACAACTTAAACCAGATAAACGCGATAAGAAAGGTGCCTC-CAAAATA 1197192 Query 1703 CCAATAAAACGAAGTAAATTAAT--AACCCAGGGTGTCGAACCACGGTTAATAAA--ACA 1758 || ||| | ||| ||| | | |||| |||||||||||| |||| |||| | Sbjct 1197191 TTAAGAAACAGGTATAACTTAGTTAACCCCAAGGTGTCGAACCATGGTTGGTAAACTAAT 1197132 Query 1759 TTCGGAATA--AACAAAATTGGGAGTTACACAATACCACCAAAACCAAAGCTTCTGCAAT 1816 |||||||| | ||||||||||| ||| ||| || | || ||| | || || Sbjct 1197131 CTCGGAATAGTATCAAAATTGGGAACTACGTTATAACATC-GTACTAAAAACTATGATAT 1197073 Query 1817 CAAGTCAAGATGTGAGTCTCAGACCGCAGGCTTTAAGTCCAC 1858 ||||||| ||||||||||||| |||||| ||||||||||||| Sbjct 1197072 CAAGTCAGGATGTGAGTCTCAAACCGCATGCTTTAAGTCCAC 1197031 Score = 342 bits (378), Expect = 6e-91 Identities = 329/425 (77%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 3 TATTTTTATTCAAAGACTGTTTGAGCTACAACCTGAACCTGCTTGACTAGATTGCGCGAC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198085 TATTTTTATTCAAAGACTGTTTGAGCTACAACCTGAACCTGCTTGACTAGATTGCGCGGA 1198026 Query 63 GATTTATTCAACACAAGCATTTATCAGTACTTAGTTTCTTTCAACCGCAATTCAAAATAG 122 |||||||||||||||||||||||||||||| ||| | |||||||||| | ||||| | Sbjct 1198025 GATTTATTCAACACAAGCATTTATCAGTACATAGATCACATCAACCGCAAATTAAAATCG 1197966 Query 123 TAAAATAAGTATTTTGATTTATTCCATTATACCATTTAGTTATAATACCGTGACTTTGGG 182 || | ||||| |||||| ||||||||||| |||||| |||| ||||||||||||||| Sbjct 1197965 TAGATTAAGTTTTTTGACTTATTCCATTA---CATTTACATATATTACCGTGACTTTGGG 1197909 Query 183 ACAA-TTATTAGTTATTAAGCGTAAACATAGTATTTGAGGATCATTCAACTTAATATATA 241 | || || |||| ||||| || | || ||||| ||||| ||| | ||||| | || Sbjct 1197908 AAAACTTGTTAGCCATTAATTATATATATTATATTTTAGGATTATTTACCTTAAGACGTA 1197849 Query 242 CATTACTTAAAANNNNNNNNNNNNNNNNNNTATTTACTGTTCTCGAAATGTATCAACAGA 301 || |||| || | || ||||| |||| ||| ||||||| Sbjct 1197848 CACCACTT--AACCTTTAATTTGTCTAACCGTCTGACCGTTCTTGAAAAGTACCAACAGA 1197791 Query 302 TTGACTTCAACGCAGTTGACTACAGCGTACTCTACAATCCGGGTGGCCAGCTGGTCCAAC 361 ||||||||||||| |||| ||||| ||||| |||||| | |||| ||| |||||| | Sbjct 1197790 TTGACTTCAACGCCATTGATTACAGTGTACTTTACAATGCAAGTGGACAGTTGGTCCGGC 1197731 Query 362 CAACCGCCATCGTTGGATCACCTGTCCACTATGAAGCTGTTTATCCCACACCAATGTTGC 421 |||||||||| |||||| |||||| || ||||| ||||||| || || ||| ||| Sbjct 1197730 CAACCGCCATTGTTGGACCACCTGCTGCCTTCGAAGCCATTTATCCTACGCCGATGGTGC 1197671 Query 422 CTTAC 426 ||||| Sbjct 1197670 CTTAC 1197666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5874903049032