Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_025218.2 Length=8021 Score E Sequences producing significant alignments: (Bits) Value seq45481 98.7 5e-17 seq12113 87.8 9e-14 seq1543 82.4 4e-12 >seq45481 Length=10312 Score = 98.7 bits (108), Expect = 5e-17 Identities = 214/319 (67%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 6530 TGGAAGAATGGATTGCCTTCGGGCTGGAGGTGGACGGCTGTATTGGACACCATCCTGAAC 6589 |||| ||||||| | || || || |||||||||||||| || || ||||| ||||| ||| Sbjct 9428 TGGAGGAATGGACTACCGTCAGGTTGGAGGTGGACGGCCGTCTTAGACACAATCCTAAAC 9487 Query 6590 GTGTGCAGCTTCAGGGTGATAAGGAAAATATCTGAGATACGACTGGGTAAACCCTTCTGG 6649 ||||| |||||||| | || ||||||| | | || | || ||| | Sbjct 9488 GTGTGTTCCTTCAGGGCGCTAGCGAAAATAGCACAAGGGAGAATCTGTGAACGAGCATAT 9547 Query 6650 GTTGGACATTTCTACGCACAGGGGGATGACGTAATCTTCGCAGCACGGGAT-----TTGG 6704 ||||| | || || || || || |||||||| ||||| | ||| | | ||| Sbjct 9548 GTTGGCAACTTTTATGCGCAAGGAGATGACGTCATCTT--TACCACCGACTCACTATTGT 9605 Query 6705 GCGGTATCCGCCTGATAATTGACACGTACGGTAAGTTGGGGTACGAGGTACATCCGTACA 6764 | | | || || ||||| ||||| || | || || |||||||| || | Sbjct 9606 TCACAAAGTAC---ATTATAGACACCTACGGCCAGATAGGATATGAGGTACACCCTATGA 9662 Query 6765 AGACGTATATCTCGAgggggaggggggAGTTCTTACGCAGGAGTTACGAAGCAATCGGTG 6824 |||| || || ||| | |||| || |||||| || | |||||||||||| | | || | Sbjct 9663 AGACATACATATCGCGATGGAGAGGAGAGTTCCTAAGAAGGAGTTACGAACCTACGGGGG 9722 Query 6825 TGACCGGATATCTGGCCAG 6843 |||| || ||| | || || Sbjct 9723 TGACAGGCTATGTCGCAAG 9741 >seq12113 Length=10901 Score = 87.8 bits (96), Expect = 9e-14 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 6125 GAGGTGATGCACATACTACAGAAAAGTGAAGCGGGGAAAGTGCGGAGTGTTGTAAAGACA 6184 |||| ||||||| || | ||||||||||||| || | || || || |||||| Sbjct 6126 GAGGAGATGCACGTAATGCAGAAAAGTGAAGGATCTAAGATCAGGCCAGTGGTTAAGACA 6185 Query 6185 GGGGATAAAGTGAACCGCAAAATGAATTATCTCAGCGGGTACCTGGAAGATGGCTTACAT 6244 || | | || || | ||||||||||| || | || |||||||||| | || Sbjct 6186 GGTAACGAGGTAAATAGAAAAATGAATTACCTGTCGGCATATTTGGAAGATGGGCTGCAC 6245 Query 6245 GGCAGCCCCCTCAGCACTCTGTTTGCGGGGGAGGCTGGCAACGAAAGAATTGATTTTGAC 6304 ||| || || || || ||||||| |||||| || ||||| | ||| || | |||| Sbjct 6246 GGCTCTCCTCTTAGTACATTGTTTGCCGGGGAGATCGGAAACGAGAAAATCGACTATGAC 6305 Query 6305 CTGATTGACGCTGTGCGCGACGAATCCACCTGGAAGGTTCCCCTTGATCAGGGCGCGTTC 6364 ||||| | ||||| | ||| | ||||| || || | |||||||| | ||| Sbjct 6306 TTGATTAAAGCTGTCAGAAGCGATGTAATGTGGAAAGTCCCGTTAGATCAGGGGGGTTTC 6365 Query 6365 GACGAGAAGCAGAGTAAAATGTCGAT 6390 || || | ||||||||| ||| || Sbjct 6366 GATCAGCACCAGAGTAAAGAGTCCAT 6391 >seq1543 Length=14506 Score = 82.4 bits (90), Expect = 4e-12 Identities = 160/236 (68%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 6651 TTGGACATTTCTACGCACAGGGGGATGACGTAATCTTCGCAGCACGGGATTTGGGCGGTA 6710 ||||| ||||||| || ||||| |||||||| ||||| | | || || Sbjct 9037 TTGGAAATTTCTATGCTCAGGGCGATGACGTCATCTTTTCGTC----GAATTCTCTTACG 9092 Query 6711 TCCGCCTGATA----ATTGACACGTACGGTAAGTTGGGGTACGAGGTACATCCGTACAAG 6766 | || | |||| || ||||| || || | |||| ||||| || || ||| ||| Sbjct 9093 TTCGTCAGATACCTCATCGACACCTATGGCCAAGTGGGTTACGAAGTGCACCCGCTCAAA 9152 Query 6767 ACGTATATCTCGAgggggaggggggAGTTCTTACGCAGGAGTTACGAAGCAATCGGTGTG 6826 ||||||||||| | |||| || ||||| | ||| |||| |||||| ||| || || Sbjct 9153 ACGTATATCTCCACATGGAGAGGTGAGTTTCTGCGCCGGAGCTACGAACCAACAGGGGTA 9212 Query 6827 ACCGGATATCTGGCCAGGACCATGCATGGGCTGCGGTTTAAGAACCCAATACAGGA 6882 ||||| || | || |||| ||| | | |||||||||||||| | ||||| Sbjct 9213 ACCGGGTACGTAGCAAGGAGTATGATTAACATCAGGTTTAAGAACCCAGTCCAGGA 9268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25537463722720