Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_027212.1 Length=5704 Score E Sequences producing significant alignments: (Bits) Value seq9994 89.7 2e-14 >seq9994 Length=6265506 Score = 89.7 bits (98), Expect = 2e-14 Identities = 174/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 2718 GAAATGTACGAATCCATGACCTTCTGTGCACCTATAGATAATATAGGGTTGGCATACTCA 2777 || ||||| ||||| ||||| || ||| || | | | ||||||||| | | ||||| Sbjct 56877 GATATGTATGAATCAATGACATTTTGTTCATCAGTGAACAATATAGGGATACCCTACTCT 56818 Query 2778 GATAAAACAACATGGTACGT-ATACGGATCAAACTACAACTCAGGA----GACCCAATCA 2832 ||| || |||||||| ||| ||||||||||| | | | | ||||| ||| Sbjct 56817 GATCCTACGGATTGGTACGTCATA-GGATCAAACTATGAATGAATACAACGACCCTGTCA 56759 Query 2833 TCACCGGTACTAAGGTGTCACAAATTCTGTGGCCCGATCCTCCCACCATAGATGCCATGT 2892 ||| |||| ||||| ||| ||| | ||||| ||||| || |||| | | | Sbjct 56758 TCAATAGTACCAAGGTAACACCAATACAATGGCCTGATCCCCCATTGTTAGAGACTCTTT 56699 Query 2893 GGAACACGGCAAAAAACTATATACTGAAACCAGCAGCGTCGGCCCTGGTGGGATTCATTA 2952 || | ||||||||||||||||||||||| || | || || || | || ||| | | Sbjct 56698 GGCAGGGAGCAAAAAACTATATACTGAAACCGGCGGTATCAGCGCTAGCCGGTTTCTTGA 56639 Query 2953 CAGGAGGGCCGGCG 2966 | ||||| || ||| Sbjct 56638 CTGGAGGACCAGCG 56625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18137748575715