Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_029312.1 Length=5713 Score E Sequences producing significant alignments: (Bits) Value seq9994 120 1e-23 >seq9994 Length=6265506 Score = 120 bits (132), Expect = 1e-23 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 2856 GTATCGCCGATACAATGGCCCGATCCGCCCCTATTGGATACATTATGGCAGGGGGCAAAA 2915 ||| | || ||||||||||| ||||| || | || || || | |||||||| |||||| Sbjct 56744 GTAACACCAATACAATGGCCTGATCCCCCATTGTTAGAGACTCTTTGGCAGGGAGCAAAA 56685 Query 2916 AACTATATTCTCAAACCAGCGGCGTCTGCGCTCGCTGGTTTTCTGACAGGGGGTCCTGCT 2975 |||||||| || ||||| |||| || ||||| || ||||| |||| || || || || Sbjct 56684 AACTATATACTGAAACCGGCGGTATCAGCGCTAGCCGGTTTCTTGACTGGAGGACCAGCG 56625 Query 2976 GGTGCGGCCGTTGCAGGGGCGACGCACATTGCGCACCAGCTGGTAACAGACTTA 3029 || || || ||||||||||| | || || | || || | |||||||||||| Sbjct 56624 GGGGCAGCAGTTGCAGGGGCAGCCCATATAGTCCAGCAAATAGTAACAGACTTA 56571 Score = 114 bits (126), Expect = 5e-22 Identities = 320/479 (67%), Gaps = 18/479 (4%) Strand=Plus/Minus Query 1995 ATATCGTGGTCGACGCAGGGTCCGGAG-TGTTCCAACCCGTCTTATAACATACAGACGAT 2053 ||| | ||||||| ||| | || ||| || |||| |||||||||||||| || || Sbjct 57608 ATAACTTGGTCGATACAGAGACCAGAGGTGGCTGTACCC-TCTTATAACATACAAACAAT 57550 Query 2054 GTCATCCGTTATGCGGGTAGCAACTGCCATGGGACTG-TTATACACACATACGGACAGCT 2112 | | || |||| ||||||| || | | | || |||| ||||| || ||| | Sbjct 57549 GACTTCTGTTAATAGGGTAGCTACATCTCTAGACTTGATTATG-ACACACACCGACTCTT 57491 Query 2113 ACGTCTTTGGGTCACCCAGGGGCATGACCCATTGGATACATATGCTCGCGAATGCCCTGA 2172 | |||| ||||||| || || |||||| |||||||| | || || || | | Sbjct 57490 ATCGATTTGCTTCACCCATTGGTTTGGTGCATTGGGTACATATGTTAGCAAACGCAGTTA 57431 Query 2173 GCTTCTCGATGTCTTCGTTTTTTGCCATCAACGATACATCGCCCAGAGACTGGATAGGCT 2232 | || | | ||| ||| | | || || |||| | |||| | ||| ||| ||| | Sbjct 57430 GTTTTACAACATCTAGCTTTCTGTCGATAAATGATATAACGCCAAAAGATTGGGCAGGTT 57371 Query 2233 TAGATAACAGATATGACGTGGGTTTCAGGGCATCAATTGTGTCA---CAGATGAAATCAG 2289 | ||| | ||||||| | | ||| | || || || | | ||| ||||| | Sbjct 57370 TGTTTAATAAATATGACAATGCGTACAGAG-AT--ATGGTTTTAGACCAGCTGAAAACGT 57314 Query 2290 CGTTTTTCTC-GGACTTGATAGTGCACCACGACGTGGAGAACCTGTTTGGGAATATACCA 2348 | || | || ||| | | ||||||||||||| | | |||||||| | ||||||| Sbjct 57313 CTTTGTATTCAGGAATCG-TAGTGCACCACGATATACAAAACCTGTTCGAAAATATACAT 57255 Query 2349 GAATGGGACATGGACA---TAGCTGAG---GACTATTGGTTGTTGTCCCCATATGGGAAC 2402 ||||||||||| || | |||| || ||||||||| || | || ||||||| | Sbjct 57254 GAATGGGACATCGATATTCTAGCATAGATAGACTATTGGATGCTCTCTCCATATGAAGAT 57195 Query 2403 GTGCAGTGGATGACGTACAGCCCTGTGCCATTCCACTGCACATGGCAATGGATAGAAAA 2461 || | |||||||| | || |||||||| | |||||||| | |||||||| |||| Sbjct 57194 ATGGATTGGATGACTTTTAGTCCTGTGCCCTCACACTGCACCTTACAATGGATGCAAAA 57136 Score = 107 bits (118), Expect = 7e-20 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 264 ATGGACAACATTCTGAAGAGTCCAGCGACGGTGAAGAATATCCTTGGATGGACCTTCTCC 323 ||||| || ||||||| |||||||||||| ||||||||| | | |||||||| || ||| Sbjct 59336 ATGGAGAAAATTCTGACGAGTCCAGCGACTGTGAAGAATTTAATAGGATGGACATTTTCC 59277 Query 324 CCGCTTCCGAAGGTGGGGTCACAAGTTGGAGACCTGAACAATACCCCAGGTGCAAGCGAC 383 || | | | ||||||||| ||| || | || || || ||| | | || Sbjct 59276 CCATTACTACAAGTGGGGTCATCAGTAGGGAATCTTCTCACAACTCCAACAGGATTAGAT 59217 Query 384 CTCGCATCCCAGAACGGGTGCAAATCGCAGTCTTTTACTTCTTGGGACTGTGTTTCGCGC 443 ||| ||| | | || ||||| ||||| || | ||| || ||||||||||| || || Sbjct 59216 TCCGCTTCCAAAATTGGATGCAAGTCGCAATCGTATACATCATGGGACTGTGTATCCCGT 59157 Query 444 TTATATGTTGGTGG 457 |||||||||||||| Sbjct 59156 TTATATGTTGGTGG 59143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18166543731330