Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_027212.1 Length=5704 Score E Sequences producing significant alignments: (Bits) Value seq3471 192 2e-45 seq13892 118 4e-23 >seq3471 Length=17633 Score = 192 bits (212), Expect = 2e-45 Identities = 750/1161 (65%), Gaps = 26/1161 (2%) Strand=Plus/Minus Query 3701 TTCCCAGATGTGTTTTCGAAGGGTCCATGTTATATGCTGTTTGTCCATTTGCACTGGTTG 3760 ||||| | || ||| || | ||||| | || ||| ||| |||||| |||| ||||| Sbjct 11642 TTCCCCAAGGTATTTACGCATGGTCCCGGGTACATGTTGTATGTCCACATGCATTGGTTA 11583 Query 3761 ACGGCCAAGTGTCCGTACACAACTGAGCAGATAGTGAGCGACATAACTGAGTGGGTTGAT 3820 || |||||||| || |||||| |||||||| | || || ||| ||||| | Sbjct 11582 ACCGCCAAGTGCCCTTACACAGAGCAGCAGATATTAGATGATGTAGATGAATGGGTGAGT 11523 Query 3821 TCTAAGATGGAAGG-AAGAACAAAAGAAG-TTGACCAGACGATATGCGACAAGGTTTTGG 3878 | | || || || ||||| |||| || |||| | || || || || |||| Sbjct 11522 AGTGACATCGATGGGAAGAA--AAAGCAGCTTGATGATCGAATGTGTGAGCGAGTATTGG 11465 Query 3879 ATAAGGTGGT-ACTAGAGTGGTATAAAGGTGAGGCAGGAGGTTTTTTATCATTCAAGGAT 3937 || || | || | | ||||| ||||| || | | ||| || ||||| || Sbjct 11464 ATCGCGTATTTACGACA-TGGTACAAAGGAGAAACTGACGGTCACCTAAGTTTCAACGAA 11406 Query 3938 TATTGCAACGATTATGTACGGTGGGGTACCAGCGGCGGTGCTCCCAAAGCCGAAGTTCTC 3997 ||||| || ||||||| | ||||| || || || ||||| ||||||| | | | Sbjct 11405 TATTGTAATGATTATGCCAGATGGGGGACAAGTGGGGGTGCACCCAAAGTCAGGATGGAC 11346 Query 3998 GGGCAAGAATATAGGTCTAAGTGGGCTTGGGCCATTAGTCATGCAACTAACGCAGAC--- 4054 || ||||| |||||||| | |||||| ||| | || |||| ||||| || || Sbjct 11345 GGACAAGATTATAGGTCCATGTGGGCGTGGTCAATATATCATTCAACTGACCATGAAACG 11286 Query 4055 GGT-AGT--CTAAAAGAGGATTACGACCTATATGAAGAAGCACTGAAAGAAAGAACCAAT 4111 ||| ||| |||| ||| || || || || | || ||||| ||||| || | Sbjct 11285 GGTGAGTTGCTAAT---GGACTATGATCTGTACGCCCGTGCTCTGAAGGAAAGGACAAGC 11229 Query 4112 AGTGTTATAGCATTGAAAGAAGAACCGGCGAAAACCAGAGAAATNNNNNNNNNNNNNNTG 4171 ||| || || | || ||||| ||||| || || | ||||| || Sbjct 11228 AGTACCATCGCTCTCAAGGAAGAGCCGGCCAAGACGCGTGAAATTATCACTACCACCATG 11169 Query 4172 GCATCGTACCTACGTCAATCTTATTTGATGTATCGTTGGGGGAAACCTAACATACCTTCC 4231 ||||| ||||||||||| ||||| ||||| || ||||| |||| || || | Sbjct 11168 GCATCATACCTACGTCAGAGCTATTTAATGTACCGATGGGGACCTCCTAGGATCCCGAGC 11109 Query 4232 CCTATATCAACTGCTACTTGGATGGGTAAATTCGAAAG-AGCGAGTCCATCATGGTATGG 4290 || ||||||| | || ||| |||| | ||| ||| | | | || || |||||||| Sbjct 11108 CCCATATCAAGCTCAACGTGGTTGGGGAGATTTGAACGTAATGCTCCCCTC-TGGTATGG 11050 Query 4291 AAGTATTGACGGTGAACGGTTCGACCACTCTGTTCCAAAACAATTCATTATAGGGC-TAA 4349 ||||||||| || | || || || | | |||| ||||| || || ||| | Sbjct 11049 TTCTATTGACGGGGAGAGATTTGATCATTGCATCCCAAGCCAATTTAT-ATGTGGCATTG 10991 Query 4350 TGAACAGGCTAGGTAAATTAGATAGTGAAACAAGACAAGTGGCTCAGGATGAGATAGAAC 4409 | | || || || ||| |||| || ||||| || | ||||| | | Sbjct 10990 TCTCGCGTCTTGGAGCGTTGGATGGTGAGACTGAGTGGGTGGC-CA--AAGAGATCAAGC 10934 Query 4410 ACATGAATGAACTGAAAGTAATATGGGGTGAGAAGGAATGGAAATGGGAAGGAGGACTAC 4469 | ||| | || | || || ||||| |||| ||||||||| ||||| ||| Sbjct 10933 ATATGCAGGATTTAGTCGTCCACTGAGGTGACCGAGAATAGAAATGGGAGGGAGGTTTAC 10874 Query 4470 TGAGTGGGTGGAGAATAACATCAATAATTGGGAGTCTGTTGAGTTGTTGTGTGGCGGAAT 4529 | |||||||||||| | ||| || ||||||| ||| || || || | || || | Sbjct 10873 TTAGTGGGTGGAGATTGACAAGTGTAGTTGGGAGCCTGGCTAGCTGCTGCATCGCCGAGT 10814 Query 4530 ACATAATCAGTAAGACTCACATGGAAGGAGCGTTACACTACGGAGTGATGGGAGACGACC 4589 ||||| | ||||| ||| ||| || |||||||||| || ||||| || || | Sbjct 10813 ACATACTAGAAAAGACGGGTATGCTAGGCGCAGTACACTACGGGGTCATGGGCGATGATC 10754 Query 4590 TCATAATGTACAGCTATAGAGAAAAATTGGAAAGTGCCAAAATGGTAGAGTTGTACAGAG 4649 | || |||| || |||| ||| || | | | | ||||||| | || | Sbjct 10753 TAATTTTGTATAGTTATAACGAAGAACTATCGATCGACCAAATGGTGTCGGAATATCGCT 10694 Query 4650 AATTCGGTCTTAAGGCCAATCTAGCA-AAAACAACATCAGGTAGCGTGGGTGAATTCTTA 4708 ||||| || ||||| ||| | ||| || |||||||| || || || || ||||| | Sbjct 10693 CTTTCGGACTCAAGGCGAATAT-GCACAAGACAACATCGGGAAGAGTCGGGGAATTTCTC 10635 Query 4709 CGGCGAGTACTGTCGAAGGGAGGAACTTGGGCATACCCAGCATTGGGT-TTTAGATCAAT 4767 |||||||| | || | ||||| | ||||| || || || | ||| | || || Sbjct 10634 AGGCGAGTAATATCAAGAGGAGGGAACTGGGCCTATCCTGCTCTCGGTCTCCGGAGCATA 10575 Query 4768 TGTGTACGCAAACCCTTGGTTAGATCACTATACTTATAACGAGGAGGCGGAGGTATCCAA 4827 || || || ||||| ||||| || || ||||| || |||| || || || || || Sbjct 10574 TG-CTATGCCAACCCGTGGTTGGACCATTATACGTACCACGAAGAAATAGAAGTCTCGAA 10516 Query 4828 CTGCTGGCTAACATTTCTGAG 4848 ||||||||| |||| | |||| Sbjct 10515 CTGCTGGCTCACATATTTGAG 10495 Score = 87.8 bits (96), Expect = 7e-14 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 5304 CGTTGCCTCGGGGACTGAGAGTCACGAGCCCTCAGCGCGTGGTAGATTTTCTCATGAGGG 5363 |||||||| ||||||| ||| | | ||||||||||| || ||| || | ||| | Sbjct 10042 CGTTGCCTAGGGGACTAAGAACCTCTAGCCCTCAGCGGGTAATAGCATTCTTGATGCAAG 9983 Query 5364 GGACGAAAGAGTATACGGGAATAACAACAATCCAACATACCAAAGACTCAATGCAAGCAT 5423 || | |||| ||| | |||||| |||||||||| || ||||| || || ||||| ||| Sbjct 9982 GGCCCAAAGTGTACGCAGGAATATCAACAATCCAGCACACCAAGGAAGCATTGCAATCAT 9923 Query 5424 ACTCTGACATAGG 5436 |||| || |||| Sbjct 9922 ACTCATACTTAGG 9910 >seq13892 Length=3816 Score = 118 bits (130), Expect = 4e-23 Identities = 439/684 (64%), Gaps = 28/684 (4%) Strand=Plus/Minus Query 3720 AGGGTCCATGTTATA--TGCTGTTTGTCCATTTGCACTGGTTGACGGCCAAGTGTCCGTA 3777 || || |||||| || || |||| || || ||| ||||| |||| || |||||||| || Sbjct 2017 AGTGTACATGTTGTACATGTTGTTCGTGCACTTGTACTGGATGACAGCAAAGTGTCCATA 1958 Query 3778 CACAACTGAGCAGATAGTGAGCGACATAACTGAGTGGGTTGATTCTAAGATGGAAGGAAG 3837 ||| | || |||||| | | |||||| ||||||| | | |||| || | Sbjct 1957 CACCAAGGACCAGATAATCGGTGACATAGAGCAGTGGGTGTCGGCGAGTCTGGATGGGA- 1899 Query 3838 AACAAAAGAAGTTG-ACCAGACGATATGCGACAAGGTTTTGGATAAGGTGGTACTAGAGT 3896 || ||||| || || || | | || || || ||| | ||||| | ||| | ||| Sbjct 1898 AAGAAAAGTAGCTGGACTATAATATGTGTGAGAAGATGTTGGACAGCGTGTTTTCGCAGT 1839 Query 3897 GGTATAAAGGTGAGGCAGGAGGTTTTTTATCATTCAAGGATTATTGCAACGATTATGTAC 3956 ||| | || || | | ||| | | | ||||| || ||||||||| ||| || Sbjct 1838 CGTACCACGGGGAACCTGAAGGATGCCTGACTTTCAAAGAATATTGCAACAATTTCACAC 1779 Query 3957 GGTGGGGTACCAGCGGCGGTGCTCCCAAAGCCGAAGT-TCTCGGGCAAGAATATAGGTCT 4015 | ||||| || || || || || | ||| | | | | || | || || || || Sbjct 1778 GTTGGGGCACAAGTGGTGGCGCACTAAAAATAAACTTGTATTGGACC-GATTACAGATCA 1720 Query 4016 AAGTGGGCTTGGGCCATTAGTCATGCAACTAACGCAGAC---GGTAGTCTAAAAGAGGAT 4072 |||||||| ||| | || || || || || | || || ||||| | || Sbjct 1719 AAGTGGGCATGGTCAATCGCACACGCTACAGACCAAAACACAGGCGACCTAAAGCATAAT 1660 Query 4073 TACGACCTATATGAAGAAGCACTGAAAGAAAGAACCAATAGTGTTATAGCATTGAAAGAA 4132 |||||||| |||| |||||| |||||| | || | || | |||||||| || ||| Sbjct 1659 TACGACCTTTATGCTCAAGCACAAAAAGAACGCACAAGTACT---ATAGCATTAAAGGAA 1603 Query 4133 GAACCGGCGAAAACCAGAGAAATNNNNNNNNNNNNNNTGGCATCGTACCTACGTCA---- 4188 || || || |||||| | ||||| ||||||| || ||| | | Sbjct 1602 GAGCCAGCCAAAACCCGGGAAATTATAACCACATCCATGGCATCCTATCTATGGAATCCT 1543 Query 4189 ATCT----------TATTTGATGTATCGTTGGGGGAAACCTAACATACCTTCCCCTATAT 4238 |||| ||| | |||||||| ||||| ||||| | |||||| |||| | Sbjct 1542 ATCTACGACAAAGCTATCTTATGTATCGCTGGGGCAAACCGAGAATACCTAGCCCTGTGG 1483 Query 4239 CAACTGCTACTTGGATGGGTAAATTCGAAA-GAGCGAGTCCATCATGGTATGGAAGTATT 4297 | ||| ||| |||||||||||||| || ||| ||| |||||||||| || Sbjct 1482 CCTAGAGTACATGGCAGGGTAAATTCGAAAGGATGGAG-CCAAGATGGTATGGATCAATC 1424 Query 4298 GACGGTGAACGGTTCGACCACTCTGTTCCAAAACAATTCATTATAGGGCTAATGAACAGG 4357 ||||| ||||| || ||||||| |||| || | ||||| | || |||| | || Sbjct 1423 GACGGAGAACGATTTGACCACTGCATTCCGAAGGAGTTCATCACTGGAATAATAGCCCGG 1364 Query 4358 CTAGGTAAATTAGATAGTGAAACA 4381 | ||||| | || || || ||| Sbjct 1363 TTGGGTAATCTGGACAGCGAGACA 1340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18133497534340