Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_025218.2
Length=8021
Score E
Sequences producing significant alignments: (Bits) Value
seq2793 113 2e-21
seq918 78.8 5e-11
>seq2793
Length=12006
Score = 113 bits (124), Expect = 2e-21
Identities = 183/261 (70%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 6131 ATGCACATACTACAGAAAAGTGAAGCGGGGAAAGTGCGGAGTGTTGTAAAGACAGGGGAT 6190
|||||| || | ||||||||||||| | ||| | ||| || || ||||| || ||
Sbjct 10185 ATGCACGTAATGCAGAAAAGTGAAGGGTCAAAAATCCGGCCAGTCGTCAAGACGGGAAAT 10244
Query 6191 AAAGTGAACCGCAAAATGAATTATCTCAGCGGG-TACCTGGAAGATGGCTTACATGGCAG 6249
|||| ||||| |||||||| || || || | | ||||||| ||| | || ||
Sbjct 10245 GAAGTAAACCGAAAAATGAACTA-CTTGTCGACATTCTTGGAAGACGGCCTGCACGGGTC 10303
Query 6250 CCCCCTCAGCACTCTGTTTGCGGGGGAGGCTGGCAACGAAAGAATTGATTTTGACCTGAT 6309
|| || ||||| ||||||||||| ||||| || || |||| ||| || | ||||||||
Sbjct 10304 GCCGCTTAGCACACTGTTTGCGGGCGAGGCCGGGAATGAAAAAATCGACTACGACCTGAT 10363
Query 6310 TGACGCTGTGCGCGACGAATCCACCTGGAAGGTTCCCCTTGATCAGGGCGCGTTCGACGA 6369
|| || || || || | |||||||| || || || ||||| | || ||| |
Sbjct 10364 AGAGGCAGTACGGTGTGAGGCGTTATGGAAGGTGCCTCTCGACCAGGGGGGATTTGACCA 10423
Query 6370 GAAGCAGAGTAAAATGTCGAT 6390
| | ||||||||| ||| ||
Sbjct 10424 GCACCAGAGTAAAGAGTCAAT 10444
>seq918
Length=13036
Score = 78.8 bits (86), Expect = 5e-11
Identities = 110/150 (73%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 6455 GCGGTATGGGCGGCGTTGTGGGATAGCTTGTTCGTCCGGGGCGCGCTGGTT--GAGTGGG 6512
||||| |||| |||||||||||||||| | || | || ||| || ||| | |||||
Sbjct 4550 GCGGTGTGGGAGGCGTTGTGGGATAGCCTCTTTGGCCTGGGGGCATCGGTCAGGTGTGGG 4491
Query 6513 CGG-ACGAGTCTCGGCCTTGGAAGAATGGATTGCCTTCGGGCTGGAGGTGGACGGCTGTA 6571
| | |||| ||| |||| ||||| ||||| ||||| |||||||||||||| |
Sbjct 4490 CCTCATGAGT-TCGAG--TGGATTAATGGGTTGCCATCGGGATGGAGGTGGACGGCAATC 4434
Query 6572 TTGGACACCATCCTGAACGTGTGCAGCTTC 6601
|||||||||| || || | || || |||
Sbjct 4433 CTGGACACCATACTCAATATTTGTAGTTTC 4404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 25550198775640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |