Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_029312.1 Length=5713 Score E Sequences producing significant alignments: (Bits) Value seq6506 118 4e-23 >seq6506 Length=7774878 Score = 118 bits (130), Expect = 4e-23 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 2862 CCGATACAATGGCCCGATCCGCCCCTATTGGATACATTATGGCAGGGGGCAAAAAACTAT 2921 || ||||| ||||| | || ||| | ||||| || | |||||||| |||||||||||| Sbjct 1571396 CCAATACAGTGGCCGGGCCCACCCTTGTTGGAGACTCTCTGGCAGGGTGCAAAAAACTAT 1571337 Query 2922 ATTCTCAAACCAGCGGCGTCTGCGCTCGCTGGTTTTCTGACAGGGGGTCCTGCTGGTGCG 2981 || || ||||| ||||| || ||||| || ||||| |||| || || ||||| || ||| Sbjct 1571336 ATACTGAAACCGGCGGCATCAGCGCTGGCCGGTTTCTTGACTGGAGGCCCTGCAGGCGCG 1571277 Query 2982 GCCGTTGCAGGGGCGACGCACATTGCGCACCAGCTGGTAACAGACTTATCAAC-GGAAAA 3040 || || || ||||| || || || || || || | || || ||| | | | ||| Sbjct 1571276 GCAGTGGCGGGGGCAACACATATAGCACAGTAGTTAGTCACGGACCTGGCTCCTACCAAA 1571217 Query 3041 GACGGGTACCAAAGCCCGGGAAGCCGTAACCCGGGCGGA 3079 || | | |||||||| |||||||||| | |||||| Sbjct 1571216 GA-TGCTCCCAAAGCCACGGAAGCCGTAGTCAAGGCGGA 1571179 Score = 105 bits (116), Expect = 2e-19 Identities = 217/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 747 GGGTTTTACTACAGTGATATGATACCCGTCAGATCTGCAGCGGTGAGTAGCATGACGGCG 806 |||||||| ||| ||||| |||||||| || | || ||| || || | |||| Sbjct 1573511 GGGTTTTATTACTCAGATATAATACCCGTGAGGTGTGTAGCTGTTAGCACAATGATATGT 1573452 Query 807 CCGAGAGAGACAGACCCCATGCCGTGGACACCAGTTTTCCAGGCGCTGGCAACTAGACTG 866 |||||||| || ||| |||| | | || | |||| || || ||||||| Sbjct 1573451 GGAAGAGAGACGGATCCCGTGCCCTATAGCCCGCAGTACCAGATTCTAGCCGATAGACTG 1573392 Query 867 AACGACCCCGCACAAACCGGAGTATTGGCTGCCGTTGTCAGGAGTCCAAACGTTCGAGAC 926 || |||||||||||||| ||||| || | || || || | | ||||| ||| ||||| Sbjct 1573391 AATGACCCCGCACAAACTGGAGTCTTATCCGCGGTCGTGCGAGGGCCAAATGTTAGAGAC 1573332 Query 927 TGTACGACAATGTCATCTTTGGTCAAATCAGTTATGCTGAGGCCATCCACCCGTTATGAG 986 ||| | ||||| | ||||||| | | ||||||||||||||||| | |||||| Sbjct 1573331 GCAACGGCTATGTCGTTACTGGTCAAGGCGATGTTGCTGAGGCCATCCACCAGATATGAG 1573272 Query 987 CTGGCGGCTATGGTGCGAGTCCTGGCCATGCAACTGAGTGTTAGCGAGGAGACCTATGCT 1046 | || || || |||| ||| ||| | ||| | | |||| |||||| Sbjct 1573271 ATAGCAGCGGTGCTGCGGTGTGGGGCGATGGGTTTATCTGTCGGACAAGAGAGCTATGCC 1573212 Query 1047 GTTGATCCCATACCTTTAAGGTT 1069 |||||||||||| | ||||| Sbjct 1573211 TGTGATCCCATACCGTACAGGTT 1573189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18154141190760