Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_011508.2 Length=2591 Score E Sequences producing significant alignments: (Bits) Value seq110264 1074 0.0 >seq110264 Length=1310 Score = 1074 bits (1190), Expect = 0.0 Identities = 1028/1314 (78%), Gaps = 8/1314 (1%) Strand=Plus/Plus Query 32 ACCTCTGATGGTGTAAACATGAAAGTACTAGCTTTAAGACACAGTGTGGCTCAAGTGTAT 91 |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1 ACCTCTGATGGTGTAAGCATGAAAGTATTAGCTTTAAGACACAGTGTGGCTCAGGTGTAT 60 Query 92 GCAGACACTCAAGTCTACGTTCATGATGATACAAAAGATAGTTATGAAAACGCTTTTTTA 151 ||||| || ||| ||||| ||||| ||| |||||||| |||||||| || ||| | Sbjct 61 GCAGATACGCAAACTTACGTACATGACGATTCAAAAGATGAGTATGAAAATGCATTTCTC 120 Query 152 ATCTCTAATCTTACGACCCATAATATTTTATACTTAAATTATAGCATTAAAACATTAGAA 211 || |||||||| || || |||||||| |||| ||||||||||| ||||||||||| || Sbjct 121 ATTTCTAATCTAACTACACATAATATACTATATTTAAATTATAGTCTTAAAACATTAAAA 180 Query 212 ATATTAAATAAGTCAGGAATAGCTGCAATTGCTTTACAATCACTTGAAGAATTATTCACA 271 ||||||||||| ||||| ||||| ||| ||| ||||||| | || |||||||| || Sbjct 181 ATATTAAATAAATCAGGTATAGCGGCAGTTGAAGTACAATCTCCAGATGAATTATTTACT 240 Query 272 TTAATAAGGTGTAATTTCACTTATGATTATGAACTTGATATAATATATTTACATGATTAT 331 ||||||||||||||||| || || |||||||| | | ||||| ||||||||||||||| Sbjct 241 TTAATAAGGTGTAATTTTACATACGATTATGAGAATAACATAATTTATTTACATGATTAT 300 Query 332 TCATATTATACCAATAATGAAATTAGAACAGACCAACATTGGATAACAAAAACAAATATT 391 ||||||||||| |||||||| || |||||||| |||||||||||||| ||||| | || Sbjct 301 TCATATTATACTAATAATGAGATAAGAACAGATCAACATTGGATAACTAAAACCGACATA 360 Query 392 GAAGAATATTTACTACCTGGATGGAAATTAACATATGTTGGTTATAATGGAAGTGAAACT 451 || ||| |||||||||||||||||||||| ||||| || |||||||||| | || Sbjct 361 ACTGACTATCTACTACCTGGATGGAAATTAACGTATGTAGGATATAATGGAAAAAATACA 420 Query 452 AGAGGACATTATAACTTTTCATTTAAATGTCAAAACGCTGCAACAGATGATGATCTAATA 511 | || || ||||| || |||||| ||||||||| || || |||||||| ||| ||||| Sbjct 421 CGTGGTCACTATAATTTCTCATTTTTATGTCAAAATGCAGCTACAGATGACGATATAATA 480 Query 512 ATTGAATACATTTATTCAGAAGCGTTGGACTTCCAAAATTTTATGTTAAAAAAGATAAAG 571 |||||||| || ||||| | | | || || ||||||||| |||||| ||| || || Sbjct 481 ATTGAATATATATATTCCAATGAACTAGATTTTCAAAATTTTCTGTTAAGAAAAATTAAA 540 Query 572 GAAAGAATGACTACATCGTTGCCTATAGCTAGATTATCTAACAGAGTATTTAGGGATAAG 631 || |||||||||||||| | || || ||||||||||| || | || ||||| ||||| Sbjct 541 GAGAGAATGACTACATCTCTTCCAATTGCTAGATTATCAAATCGTGTGTTTAGAGATAAA 600 Query 632 TTATTCCCATCATTATTGAAAGAAC----ATAAGAATGTAGTGAACGTTGGTCCGCGTAA 687 ||||| || || ||||| |||| || | || ||| | || ||||| || | || Sbjct 601 TTATTTCCGTC--TATTG--TGAACATGTATGAAAAAGTAATAAATGTTGGACCAAGAAA 656 Query 688 TGAATCTATGTTTACATTTTTAAATTATCCAACTATAAAACAATTTTCAAATGGTGCGTA 747 |||||| ||||| ||||| ||||||| |||||| || || ||||||||||| |||||||| Sbjct 657 TGAATCCATGTTCACATTCTTAAATTTTCCAACCATTAAGCAATTTTCAAACGGTGCGTA 716 Query 748 TTTAGTAAAAGATACTATAAAATTAAAACAAGAACGATGGTTAGGTAAAAGGATATCTCA 807 | ||||| ||||||| ||||| || || ||| |||| | |||||||| | || || Sbjct 717 CGTCGTAAAGCATACTATTAAATTGAAGCAGGAAAAATGGCTGGGTAAAAGAGTGTCACA 776 Query 808 GTTTGATATTGGTCAGTATAAAAATATGCTGAATGTTCTTACAGCAATTTATTATTACTA 867 ||||||||||| || |||||||||||| | ||||| |||| | || ||||| ||||| Sbjct 777 ATTTGATATTGGACAATATAAAAATATGTTAAATGTAGTTACTACCATATATTACTACTA 836 Query 868 TAATTTATATAAAAGTAAACCAATTATATATATGATCGGATCTGCTCCATCTTATTGGAT 927 ||||||||| | |||||||| ||||| ||| |||| || ||||||||||||||||| Sbjct 837 TAATTTATACCATTCGAAACCAATAATATACATGCTCGGTTCAGCTCCATCTTATTGGAT 896 Query 928 ATATGACGTTAGGCATTATTCCGATTTTTTCTTTGAAACTTGGGATCCATTGGACACACC 987 ||||| ||| || ||||| |||||| |||||||| ||||||||||| ||||| || Sbjct 897 TTATGATATTAAACAGTATTCTGATTTTACATTTGAAACATGGGATCCATTAGACACTCC 956 Query 988 ATATTCATCAATCCATCACAAAGAATTATTTTTTATAAATGATGTGAAGAAACTGAAGGA 1047 |||||| |||| || || || |||||||||||| || || || |||||||| || || Sbjct 957 ATATTCTACAATACACCATAAGGAATTATTTTTTGATAAGGACGTTAAGAAACTTAAAGA 1016 Query 1048 TAACTCAATATTGTATATTGATATAAGAACCGATAGGGGCAATGCTGATTGGAAAAAATG 1107 ||| ||| | || || ||||||||| |||| ||||||| ||| ||||||||| | || Sbjct 1017 TAATTCAGTTTTATACATTGATATACGAACTGATAGGGAAAATATGGATTGGAAAGAGTG 1076 Query 1108 GAGAAAGACAGTAGAAGAACAAACTATTAATAATTTGGACATAGCTTATGAATATTTACG 1167 |||||| || ||| | |||||| | || ||| | | || || ||| ||||| || Sbjct 1077 GAGAAAAGTGGTGGAACAGCAAACTGTCAACAATCTAAATATTGCATATAAATATCTAGC 1136 Query 1168 AACGGGTAAAGCGAAGGTGTGTTGTGTTAAGATGACAGCTATGGATTTGGAACTGCCAAT 1227 ||| || ||||| || |||||||||||||| | |||||||||||| | ||| | ||||| Sbjct 1137 AACAGGAAAAGCCAAAGTGTGTTGTGTTAAATTAACAGCTATGGATCTAGAATTACCAAT 1196 Query 1228 TTCAGCTAAATTACTGCACCACCCAACTACGGAAATAAGATCAGAATTTTATTTATTACT 1287 | |||| |||||||| || || |||||||| ||| | ||||||||||||||| | | | Sbjct 1197 TACAGCAAAATTACTTCATCATCCAACTACTGAAGTTAGATCAGAATTTTATGCAATCTT 1256 Query 1288 AGATACTTGGGATTTAACTAACATTAGGAGGTTCATTCCTAAAGGCGTGTTATA 1341 |||| |||||| | | || |||| || || || || || || || || || Sbjct 1257 AGATGTATGGGATATTATTACTATTAAAAGATTTATACCAAAGGGTGTATTTTA 1310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8162216908610