Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_009521.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
seq788 187 2e-44
>seq788
Length=1574065
Score = 187 bits (206), Expect = 2e-44
Identities = 265/366 (72%), Gaps = 14/366 (4%)
Strand=Plus/Plus
Query 709 TCTCAAAAGGCCCAA---GACCA---TCACGGATTTACCC---GTGG--TTGCCCCATTT 757
|||||||||||| || || || ||||||| ||||| || | |||| ||||||
Sbjct 790437 TCTCAAAAGGCCAAAAGGGATCACATTCACGGACTTACCACCAGTAGCGTTGCACCATTT 790496
Query 758 GCCTTTGCAATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGA-G 816
|| |||||||| |||||||| || |||||||||||| || |||||| | || | | |
Sbjct 790497 GCTTTTGCAATTCAACAACTCGGCGCTGTCAACATCGCTAACCTCACT-CATAAGGCACG 790555
Query 817 GTATGTCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATTG 876
|||||||| ||| | || || ||||| | |||| |||||| | || | |||
Sbjct 790556 TTATGTCCCAGTTCTCCCTCCTACAGGACATCAATATGGACTTCCGAATAACCAAATTTG 790615
Query 877 GAACCCCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGGTCTCCACTTTAA 936
| |||||||| ||| || |||||||| || ||||| ||||| || || |||||||||||
Sbjct 790616 GGACCCCAACTCGTACGCACAAGCTGTGGAATATGCTAGAAACTTGGGACTCCACTTTAA 790675
Query 937 TGTGGTAGACTACACCAAGAAGCAAGGCACTGCCTGGTGGCTGTTACGCCAGCACTTTGA 996
|||||| || | | ||||| || || ||||||||| | || | || ||||||
Sbjct 790676 TGTGGTTGATGTGAACCAGAAGACCGGTACCGCCTGGTGG-TACTAAGACAACACTTTTC 790734
Query 997 AGACGGAATCTTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTCGATGGC 1056
|| | ||| |||||| || | ||||| | || || || |||| |||||| |||||||
Sbjct 790735 TGAGGAAATGTTCGAGTTGAAGCTCCCGTTCCCGGAGGTCAACTACACTTCTGCGATGGC 790794
Query 1057 TTTGAC 1062
||||
Sbjct 790795 CGTGAC 790800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4623889997930
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |