Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_009521.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value seq788 187 2e-44 >seq788 Length=1574065 Score = 187 bits (206), Expect = 2e-44 Identities = 265/366 (72%), Gaps = 14/366 (4%) Strand=Plus/Plus Query 709 TCTCAAAAGGCCCAA---GACCA---TCACGGATTTACCC---GTGG--TTGCCCCATTT 757 |||||||||||| || || || ||||||| ||||| || | |||| |||||| Sbjct 790437 TCTCAAAAGGCCAAAAGGGATCACATTCACGGACTTACCACCAGTAGCGTTGCACCATTT 790496 Query 758 GCCTTTGCAATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGA-G 816 || |||||||| |||||||| || |||||||||||| || |||||| | || | | | Sbjct 790497 GCTTTTGCAATTCAACAACTCGGCGCTGTCAACATCGCTAACCTCACT-CATAAGGCACG 790555 Query 817 GTATGTCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATTG 876 |||||||| ||| | || || ||||| | |||| |||||| | || | ||| Sbjct 790556 TTATGTCCCAGTTCTCCCTCCTACAGGACATCAATATGGACTTCCGAATAACCAAATTTG 790615 Query 877 GAACCCCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGGTCTCCACTTTAA 936 | |||||||| ||| || |||||||| || ||||| ||||| || || ||||||||||| Sbjct 790616 GGACCCCAACTCGTACGCACAAGCTGTGGAATATGCTAGAAACTTGGGACTCCACTTTAA 790675 Query 937 TGTGGTAGACTACACCAAGAAGCAAGGCACTGCCTGGTGGCTGTTACGCCAGCACTTTGA 996 |||||| || | | ||||| || || ||||||||| | || | || |||||| Sbjct 790676 TGTGGTTGATGTGAACCAGAAGACCGGTACCGCCTGGTGG-TACTAAGACAACACTTTTC 790734 Query 997 AGACGGAATCTTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTCGATGGC 1056 || | ||| |||||| || | ||||| | || || || |||| |||||| ||||||| Sbjct 790735 TGAGGAAATGTTCGAGTTGAAGCTCCCGTTCCCGGAGGTCAACTACACTTCTGCGATGGC 790794 Query 1057 TTTGAC 1062 |||| Sbjct 790795 CGTGAC 790800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4623889997930