Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078 215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters Query= NC_010347.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value seq788 152 5e-34 >seq788 Length=1574065 Score = 152 bits (168), Expect = 5e-34 Identities = 399/592 (67%), Gaps = 44/592 (7%) Strand=Plus/Plus Query 683 TCCCTGATCGCTACACTTTAGGAAGT---CTCAAAAGGCCCAAAG------CAATCGCTG 733 ||||||| | ||||||| || | | ||||||||||| |||| || || | | Sbjct 790409 TCCCTGACAGGTACACTTCAGCTAATTATCTCAAAAGGCCAAAAGGGATCACATTCACGG 790468 Query 734 ACCTACCA---GTGA--TCGCCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAA 788 || ||||| || | || || || || |||||||| |||||||| || |||||| Sbjct 790469 ACTTACCACCAGTAGCGTTGCACCATTTGCTTTTGCAATTCAACAACTCGGCGCTGTCAA 790528 Query 789 CGTCGCCAATCTCAC-CAGAGAGAGGAGGTT-TGTCCCAGTCTTTCCAGA-AGACGACCA 845 | |||| || ||||| || | || | | ||| ||||||||| | || | | ||| Sbjct 790529 CATCGCTAACCTCACTCATA-AG-GCACGTTATGTCCCAGTTCTCCCTCCTACAGGACAT 790586 Query 846 CACCTTTGGAGTCCCCCTTGAACATCATTGGAACCCCAACCTGTATTCCCAAGCTGTAGA 905 || | |||| | || | | || |||| |||||||| ||| | |||||||| || Sbjct 790587 CAA-TATGGACTTCCGAATAACCAAATTTGGGACCCCAACTCGTACGCACAAGCTGTGGA 790645 Query 906 CTATGCAAGAACTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGAAC 965 ||||| |||| | || ||||||||||||||||| ||| || ||||| || || Sbjct 790646 ATATGCTAGAAACTTGGGACTCCACTTTAATGTGGTTGATGTGAACCAGAAGACCGGTAC 790705 Query 966 CGCATGGTGGTTACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCCCGCT 1025 ||| |||||| |||| | || |||| || | | |||||| || | ||||| | Sbjct 790706 CGCCTGGTGG-TACTAAGACAACACTTTTCTGAGGAAATGTTCGAGTTGAAGCTCCCGTT 790764 Query 1026 ACCTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACACTTTATTCCT-----TGAA 1080 || ||||| |||| |||||||||||||| | || ||| | | ||||| || Sbjct 790765 CCCGGAGGTCAACTACACTTCTGCGATGGCCGTGACACACTCACTCTTCCTGCTCAAGAC 790824 Query 1081 GGA-GAAGCTG---CTGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCGGAG---C 1133 ||| | | || |||||||||||| || | ||||||||| ||| |||| | Sbjct 790825 GGACCACGGTGAGCTTGACCCATCAAATGCTATTTTCGATCTCGTCCCTTGTGGAGAATC 790884 Query 1134 CGACACATACGGCTACATTCTGAGAGAGCCACACTTC--GGAATCAA----TGTTACCAC 1187 |||| ||||| ||||| || | || | | |||| || ||||| || ||||| Sbjct 790885 CGAC---TACGGTTACATACTACGTGA--CCCTCTTCCTGGCATCAACGCGCGTCACCAC 790939 Query 1188 ATACCAGGTCATTGACGGAAGCGCTCAAGAGATAGTTTCGAACGTGTAACTT 1239 | | | |||||| | |||||| | | |||||||| |||||||||||| Sbjct 790940 GTTCGTGACCATTGATGAAAGCGCGAGACAAATAGTTTCTAACGTGTAACTT 790991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4643089541174