Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20halleri_20subsp._20gemmifera_20[genbank_20GCA_5F900078
215.1_202016-09-29] 2,239 sequences; 196,243,198 total letters
Query= NC_010347.1
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
seq788 152 5e-34
>seq788
Length=1574065
Score = 152 bits (168), Expect = 5e-34
Identities = 399/592 (67%), Gaps = 44/592 (7%)
Strand=Plus/Plus
Query 683 TCCCTGATCGCTACACTTTAGGAAGT---CTCAAAAGGCCCAAAG------CAATCGCTG 733
||||||| | ||||||| || | | ||||||||||| |||| || || | |
Sbjct 790409 TCCCTGACAGGTACACTTCAGCTAATTATCTCAAAAGGCCAAAAGGGATCACATTCACGG 790468
Query 734 ACCTACCA---GTGA--TCGCCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAA 788
|| ||||| || | || || || || |||||||| |||||||| || ||||||
Sbjct 790469 ACTTACCACCAGTAGCGTTGCACCATTTGCTTTTGCAATTCAACAACTCGGCGCTGTCAA 790528
Query 789 CGTCGCCAATCTCAC-CAGAGAGAGGAGGTT-TGTCCCAGTCTTTCCAGA-AGACGACCA 845
| |||| || ||||| || | || | | ||| ||||||||| | || | | |||
Sbjct 790529 CATCGCTAACCTCACTCATA-AG-GCACGTTATGTCCCAGTTCTCCCTCCTACAGGACAT 790586
Query 846 CACCTTTGGAGTCCCCCTTGAACATCATTGGAACCCCAACCTGTATTCCCAAGCTGTAGA 905
|| | |||| | || | | || |||| |||||||| ||| | |||||||| ||
Sbjct 790587 CAA-TATGGACTTCCGAATAACCAAATTTGGGACCCCAACTCGTACGCACAAGCTGTGGA 790645
Query 906 CTATGCAAGAACTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGAAC 965
||||| |||| | || ||||||||||||||||| ||| || ||||| || ||
Sbjct 790646 ATATGCTAGAAACTTGGGACTCCACTTTAATGTGGTTGATGTGAACCAGAAGACCGGTAC 790705
Query 966 CGCATGGTGGTTACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCCCGCT 1025
||| |||||| |||| | || |||| || | | |||||| || | ||||| |
Sbjct 790706 CGCCTGGTGG-TACTAAGACAACACTTTTCTGAGGAAATGTTCGAGTTGAAGCTCCCGTT 790764
Query 1026 ACCTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACACTTTATTCCT-----TGAA 1080
|| ||||| |||| |||||||||||||| | || ||| | | ||||| ||
Sbjct 790765 CCCGGAGGTCAACTACACTTCTGCGATGGCCGTGACACACTCACTCTTCCTGCTCAAGAC 790824
Query 1081 GGA-GAAGCTG---CTGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCGGAG---C 1133
||| | | || |||||||||||| || | ||||||||| ||| |||| |
Sbjct 790825 GGACCACGGTGAGCTTGACCCATCAAATGCTATTTTCGATCTCGTCCCTTGTGGAGAATC 790884
Query 1134 CGACACATACGGCTACATTCTGAGAGAGCCACACTTC--GGAATCAA----TGTTACCAC 1187
|||| ||||| ||||| || | || | | |||| || ||||| || |||||
Sbjct 790885 CGAC---TACGGTTACATACTACGTGA--CCCTCTTCCTGGCATCAACGCGCGTCACCAC 790939
Query 1188 ATACCAGGTCATTGACGGAAGCGCTCAAGAGATAGTTTCGAACGTGTAACTT 1239
| | | |||||| | |||||| | | |||||||| ||||||||||||
Sbjct 790940 GTTCGTGACCATTGATGAAAGCGCGAGACAAATAGTTTCTAACGTGTAACTT 790991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4643089541174
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |