Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_009521.1
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-23
>seq6
Length=25113588
Score = 118 bits (130), Expect = 1e-23
Identities = 180/254 (71%), Gaps = 18/254 (7%)
Strand=Plus/Plus
Query 709 TCTCAAAAGGCCCAAG------ACCATCACGGATTTACCC------GTGGTTGCCCCATT 756
|||||||||||| || || ||||||| ||||| || ||||| |||||
Sbjct 23467820 TCTCAAAAGGCCAAAAGGAATCACATTCACGGACTTACCACCAGTAGTTGTTGCACCATT 23467879
Query 757 TGCCTTTGCAATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGA- 815
||| |||||||| |||||||| ||| |||||||||||| || |||||| | || | |
Sbjct 23467880 TGCTTTTGCAATTCAACAACTCGGTGCTGTCAACATCGCTAACCTCACT-CATAAGGCAC 23467938
Query 816 GGTATGTCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATT 875
| |||||||| ||| | || || ||||| | ||| |||||| | || | ||
Sbjct 23467939 GTTATGTCCCAGTTCTCCCTCCTACAGGACATCAATACGGACTTCCGAATAACCAAATTT 23467998
Query 876 GGAACCCCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGG----TCTCCAC 931
|| |||||||| || | |||||||| || |||| ||||| || || ||||||
Sbjct 23467999 GGGACCCCAACTCCTACACACAAGCTGTGGAATATGGTAGAAACTTCGGACTCACTCCAC 23468058
Query 932 TTTAATGTGGTAGA 945
||||||||||| ||
Sbjct 23468059 TTTAATGTGGTTGA 23468072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4623965805520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |