Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_009521.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-23 >seq6 Length=25113588 Score = 118 bits (130), Expect = 1e-23 Identities = 180/254 (71%), Gaps = 18/254 (7%) Strand=Plus/Plus Query 709 TCTCAAAAGGCCCAAG------ACCATCACGGATTTACCC------GTGGTTGCCCCATT 756 |||||||||||| || || ||||||| ||||| || ||||| ||||| Sbjct 23467820 TCTCAAAAGGCCAAAAGGAATCACATTCACGGACTTACCACCAGTAGTTGTTGCACCATT 23467879 Query 757 TGCCTTTGCAATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGA- 815 ||| |||||||| |||||||| ||| |||||||||||| || |||||| | || | | Sbjct 23467880 TGCTTTTGCAATTCAACAACTCGGTGCTGTCAACATCGCTAACCTCACT-CATAAGGCAC 23467938 Query 816 GGTATGTCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATT 875 | |||||||| ||| | || || ||||| | ||| |||||| | || | || Sbjct 23467939 GTTATGTCCCAGTTCTCCCTCCTACAGGACATCAATACGGACTTCCGAATAACCAAATTT 23467998 Query 876 GGAACCCCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGG----TCTCCAC 931 || |||||||| || | |||||||| || |||| ||||| || || |||||| Sbjct 23467999 GGGACCCCAACTCCTACACACAAGCTGTGGAATATGGTAGAAACTTCGGACTCACTCCAC 23468058 Query 932 TTTAATGTGGTAGA 945 ||||||||||| || Sbjct 23468059 TTTAATGTGGTTGA 23468072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4623965805520