Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-19 >seq3 Length=24464547 Score = 104 bits (114), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 1315 TTCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCA 1374 ||||||| | |||| || ||||| || | ||||||||| || |||||||||||| || Sbjct 7918806 TTCAGTTACCAGCTCAAAAGCACAGCTCGCAACCTCCCTCCCTTTGCGGAAGCTGTTGCC 7918747 Query 1375 GCCTTCTCCCAGACGCACATCCGGATTTTTCCGGA--ATACCCGTTGGCCGGAAACTTTG 1432 |||||||| ||||| || ||| |||| ||||| | || ||| || | | | || | Sbjct 7918746 GCCTTCTCTCAGACACATATCAGGATGTTTCCTAACCATCCCCTTTTTCGGTACGGTTGG 7918687 Query 1433 GTCAAAAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCC 1491 || ||| || | |||| |||| || ||| | || ||||| |||||||| ||| Sbjct 7918686 ATCGAAA-ACTCTTG-ATCATGGCCTGTTCTGGAAAATAAGGCCTCTTGGCTCCGGCCTT 7918629 Query 1492 ACCGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 | || | | | | ||||| ||||||||| | || |||||| |||| ||| Sbjct 7918628 CCTGATAAAAGCGCTTACCTTACCATCCCATCGATTGTCAAGCAAGCATTCA 7918577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532759084944