Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_030890.1
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 3e-19
>seq3
Length=24464547
Score = 104 bits (114), Expect = 3e-19
Identities = 165/232 (71%), Gaps = 5/232 (2%)
Strand=Plus/Minus
Query 1315 TTCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCA 1374
||||||| | |||| || ||||| || | ||||||||| || |||||||||||| ||
Sbjct 7918806 TTCAGTTACCAGCTCAAAAGCACAGCTCGCAACCTCCCTCCCTTTGCGGAAGCTGTTGCC 7918747
Query 1375 GCCTTCTCCCAGACGCACATCCGGATTTTTCCGGA--ATACCCGTTGGCCGGAAACTTTG 1432
|||||||| ||||| || ||| |||| ||||| | || ||| || | | | || |
Sbjct 7918746 GCCTTCTCTCAGACACATATCAGGATGTTTCCTAACCATCCCCTTTTTCGGTACGGTTGG 7918687
Query 1433 GTCAAAAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCC 1491
|| ||| || | |||| |||| || ||| | || ||||| |||||||| |||
Sbjct 7918686 ATCGAAA-ACTCTTG-ATCATGGCCTGTTCTGGAAAATAAGGCCTCTTGGCTCCGGCCTT 7918629
Query 1492 ACCGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543
| || | | | | ||||| ||||||||| | || |||||| |||| |||
Sbjct 7918628 CCTGATAAAAGCGCTTACCTTACCATCCCATCGATTGTCAAGCAAGCATTCA 7918577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5532759084944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |