Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_010344.1 Length=1521 Score E Sequences producing significant alignments: (Bits) Value seq4 176 4e-41 >seq4 Length=18585056 Score = 176 bits (194), Expect = 4e-41 Identities = 337/487 (69%), Gaps = 20/487 (4%) Strand=Plus/Minus Query 772 CTCTCAGCTAGGAGTCGTAGAAGTTAGCAGTTTATCCAGAAGGATGATCTGCTACCCGAC 831 |||||||||||| ||||||||||| |||||| | || | | | ||||| |||||||| || Sbjct 8129357 CTCTCAGCTAGGTGTCGTAGAAGTAAGCAGTCTCTCTAAACGAATGATTTGCTACCCTAC 8129298 Query 832 TGCAGATCTCGCCGATGCGTCAAACCACCTCG-TTGGTAAC---AAACGCAACTGGTCTC 887 | || ||| || || ||| | | || || | || | | ||||||| Sbjct 8129297 TCTCGAATCAGCCTTCGC----AAGCACATGGATTTGTGCCCGCAAGACCGAATGGTCTC 8129242 Query 888 AAACTGCCTACGCCGAAGCTGTTCGCTACGCGAAGTATCTAGGCATGTCGTTCTCGACAG 947 | || ||||||||||||||||| ||||| || | ||||||| ||| || | |||| Sbjct 8129241 AGACCGCCTACGCCGAAGCTGTCCGCTATGCACATGATCTAGGTATGGACTTTACAACAG 8129182 Query 948 TCGACCTGGATATTAAAGTTGGCTCCTCCTGGTGGCTATTCAAGC-CCGACG-TAACTGA 1005 ||| ||| || |||||||||| ||||||| |||||||||| || || | | | |||| Sbjct 8129181 TCGTCCTAGACGTTAAAGTTGGTTCCTCCTTGTGGCTATTC--GCTCCTATGATCTCTGA 8129124 Query 1006 CGGACTTCTCTCAATACGCTGCCCACTTCCAGAGGACAACTACACTCTCGCAGGTGCCAC 1065 | || |||| | || |||||||| || ||||||||||||||| | | |||||| Sbjct 8129123 TGATCTCTTCTCTCTCCGATGCCCACTCCCCGAGGACAACTACACTGTTACCGGTGCCGT 8129064 Query 1066 CGTTTTTATGCTCTTCTACCATGACGTTGGATCGGACCCCGCAATC---GATCTCTTCAA 1122 ||| ||| || | |||| | | | || || ||| || || ||||||| Sbjct 8129063 CGTCCAAATG---TTATTCCATAAGGCCGCCGCGAACAACGCCGTCTCAGAAATCTTCAA 8129007 Query 1123 CATCGACTCTCTTGGCAATGATGACTACGGCTCATTCA-TCCGCAACCCACGCGATGGAT 1181 ||| ||| | ||| ||||||||| |||| ||| |||| ||||| |||| Sbjct 8129006 TCTCGCTTCTATACCAGATGCTGACTACGGAAGCTTCATTCCTGGACCC-CGCGAAGGAT 8128948 Query 1182 TCAACGCCTCGTCCTACTACGCCATCTCTTCAGAGGGCACCGATGAAATGTGGAAATCGT 1241 ||||| ||| |||| || |||||||| || |||| ||||||| | | |||||| Sbjct 8128947 TCAACCTCTCAGCCTATTATGCCATCTCCAATGAAGGCAGCGATGAAGTTTCGAAATCTG 8128888 Query 1242 CCGCTTA 1248 ||| ||| Sbjct 8128887 CCGTTTA 8128881 Score = 77.0 bits (84), Expect = 3e-11 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 344 CCCCACCTCCCGGCATCTAACTATGAGATCCCGCGTTACACACGCGATACTCAGCCGGTT 403 || |||||| ||| | | || ||||||||||| ||| |||| | || ||||| ||||| Sbjct 8129536 CCACACCTCTCGGAAACCAATTATGAGATCCCTCGTAACACGAGAGACACTCAACCGGTG 8129477 Query 404 GTTGGAAACAAGAATTACGAATTCTCTCTCCGCATGGATGGACGCCTTGG 453 ||||||| |||| ||||||| || | |||| | |||||| | || || Sbjct 8129476 ATTGGAAATAAGAGTTACGAACTCGCGCTCCATCTTGATGGAAGACTCGG 8129427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4758399646094