Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq3 255 6e-65 >seq3 Length=23459830 Score = 255 bits (282), Expect = 6e-65 Identities = 791/1196 (66%), Gaps = 56/1196 (5%) Strand=Plus/Minus Query 372 CCACATCCTACACCCTACACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGAT 431 ||| ||| | |||| || || || | ||||||||||||||||||||||||||||||| Sbjct 6343098 CCAAATCGTGTACCCAACGCAAGGTA---TCTCACACTACTACCCTTCCTGCCACATGAT 6343042 Query 432 GGACTACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGA 491 || | || |||| || || || || ||||||| | ||||| | | Sbjct 6343041 GGTC---------CATGCTATGAACATTACACTTTGCGATAATTTTGATTTCAAACGGGC 6342991 Query 492 AACTCCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCA 551 | ||| ||||| ||||| ||||| ||||| ||||||| || ||||| || ||| | || Sbjct 6342990 CAATCCCAACTATCACCCCTACATCCTCCGCCTCTACTGTGGTGTTCTCTTTTGGATCCA 6342931 Query 552 GTGCTTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTGCA 611 ||| | | |||||||| ||||| | | ||| ||| | || || ||| | | Sbjct 6342930 GTGTCTTAGAGCTGGAAACGATGTGAATGATCTTACTGATGTTCAACACCGGTTCCTAAA 6342871 Query 612 GCGTTTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACT 671 || ||| | ||| | |||| | || || | || |||| ||||| || |||||||| Sbjct 6342870 CCGGTTCTTGGACAACCATCCCTTGGAAACTCTCGCTGTTCCCGGCCCTCTCCTCGGACT 6342811 Query 672 CTTCAAGACACTCTGCTCCTCCCAGCCAGAGTTCCC------ACATTATGGGAAAGTTTA 725 ||||||||| || ||||| || ||||| ||||| || ||| |||||||||| || Sbjct 6342810 CTTCAAGACTCTTTGCTCTTCGCAGCCGGAGTTTCCTCATAATCATAATGGGAAAGTGTA 6342751 Query 726 CCCCCGCATTCCTGCGAGCCCAGGACCAAGACGCCGAGACATGTTC-TCAAAGAACGTCC 784 || ||||| ||||| ||||| || || || ||| |||| | ||| | || Sbjct 6342750 TCCTCGCATCCCTGCCCAACCAGGCCCGGCTCGACGTGACGCGTTCATGCGAGATCTTCT 6342691 Query 785 CAAGCGCCCAATTCTTACCCAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACG 844 | | ||| ||||| || ||||| ||||| || ||||| ||| | | | || || Sbjct 6342690 TGAAAG-CCACTTCTTGCCTAACGTCCCTGGCATCTTCGCCCTCTTGGAAGA-CTTAACC 6342633 Query 845 GACTTTCTGAGGGTGAACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTG 904 | |||| | | | |||| | || || || ||| || |||||||| || || Sbjct 6342632 GCCTTTTTACCCAATACCTCCCG-TCTATCCAAAGAGAGGCAGGCACATTCCCGTTACCC 6342574 Query 905 AGGA---GGCCAGTAACTTCGGTTTCAAGGCCTTCGCCGCTTTTCCAAACAGAATCCAGC 961 | | | | |||||||||| |||| |||| | | ||| ||| | ||| Sbjct 6342573 AAAATACCGTCTCTAACTTCGGTCACAAGACCTTTGGTCTCCATGCAAGCAGGA--CAGA 6342516 Query 962 GCGATCGTTGGATGGTTAGCTC-----CCCCGGCCTCCAGTATCCCTGTGAAGCCGA-CA 1015 | | | | ||||| | ||| || ||| | ||||| || ||||||||||| || Sbjct 6342515 G-GCT-GAAAAATGGTCA-CTCGTTTTACCTGGCTTACAGTACCCTTGTGAAGCCGATCA 6342459 Query 1016 TGAAG-ATGAATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAAC 1074 ||| ||||||| ||||| ||||| | | | ||||| |||||| | | | Sbjct 6342458 --AAGCCTGAATGAGGCGTTTGCTGATTGCTACAGCAATTTTAACTTTCAGGTCACTTCT 6342401 Query 1075 GCAGATGACAATCTCTCCACCATCACCAACTTCCTCCACATGAGGAAAAGTATGGCTTGG 1134 || | ||| || ||| | ||| | ||| |||||||||| | || ||||||||| Sbjct 6342400 GCCGCTGATAACCTCGAAAAGATCTCTTCCTTTCTCCACATGAAACACAGCATGGCTTGG 6342341 Query 1135 TTCATCCGGGCCAAGGAAGT--CGCCTGCTCGGCCGCTAGATTCTTTTCAGACTCTGGCA 1192 |||| | | || | ||| || || | | ||| || |||| || || |||| Sbjct 6342340 TTCAATCAAGTAAAAGGAGTTGCGGATGAT--GTTGCTGCATCCTTTGAAGGATCCGGCA 6342283 Query 1193 CTCTCGCCGACTGTTCTCCACACGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTC 1252 | || || ||||| |||||||| || |||| | ||||| |||| || | | || Sbjct 6342282 CCCTTGCTGACTGCTCTCCACATGGGTTGGTTGCTAACCAAGTCATGGTCG----TTCT- 6342228 Query 1253 CTCCACCTGAGGAGACTTTTGCTG-ATC-CCCGCTTCT-CCGCCGATCCAAGAGCCCTCT 1309 ||| ||| ||| | || | | ||| || || | || ||| | || || Sbjct 6342227 CTCTACC-CCGGAACATCTTCCAGAATCACCAAATTGTATTGCTGATAAGCGTGCAACCT 6342169 Query 1310 ATCCCTTCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTG 1369 || ||| ||| | |||| || ||||| | | ||||||||| || ||||||||||| Sbjct 6342168 ATGAGTTCGGTTACCAGCTCAAAAGCACAGTTCGCAACCTCCCTCCCCTTGCGGAAGCAC 6342109 Query 1370 CCGCAGCCTTCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACT 1429 || |||||||| ||||| | ||| |||| ||||| | | || || ||| | | Sbjct 6342108 TTGCCGCCTTCTCTCAGACATATATCAGGATGTTTCCTAACCATCCCTTCTTCGGGACGT 6342049 Query 1430 TT-GGTCAAAAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAG 1487 || |||| ||| || | |||| ||||| || ||| | || ||||| ||||||||||| Sbjct 6342048 TTGGGTCGAAA-ACTCTTG-ATCATGGCCCGTTCTGGAAAATAAGGCCTATTGGCTCCAG 6341991 Query 1488 CCCCACCGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 || ||||| ||| |||||||||||| |||||| | || |||||| |||| ||| Sbjct 6341990 CCTTACCGATAACAGCTCCTACCTCACTATCCCATCGATTGTCAAGCAAGCATTCA 6341935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532799588498