Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq3 336 2e-89 >seq3 Length=27950219 Score = 336 bits (372), Expect = 2e-89 Identities = 790/1174 (67%), Gaps = 44/1174 (4%) Strand=Plus/Minus Query 395 GCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGACTACATTCTTCACTCTATCA 454 ||| ||||||| ||||||| ||||| || ||||||||||||||||| | |||||||| | Sbjct 12729226 GCAAGCTCTCATACTACTATCCTTCGTGTCACATGATGGACTACATAGTCCACTCTATGA 12729167 Query 455 ATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAACTCCAAACTACCACCCTTACA 514 | | || || ||||||| || || |||||| ||| ||||| ||||| |||||||||| Sbjct 12729166 ACACGACGCTTTGTGATAGTTTTTATTTCAAGCGAGCCACTCCCAACTATCACCCTTACA 12729107 Query 515 TTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTGCTTGCGCGCTGGAAATGATG 574 ||||||| ||||||| || ||||| |||||| | || || | | ||||||||||||| Sbjct 12729106 TTCTCCGCCTCTACTGTGGCGTTCTCTTCTGGATCCAATGTCTTAGAGCTGGAAATGATG 12729047 Query 575 TTCAGGTCATTAATGACCTACACTACGATTTCTT--GCAGCGTTTCCTAGACTGCAATCC 632 | | || ||| | || | || |||| ||| | | | |||| | | | |||| Sbjct 12729046 TGAACGTTCTTACTAACGTTCAACACGAGTTCCTCAACGGGGTTT--TCGTCAATCATCC 12728989 Query 633 TCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACTCTTCAAGACACTCTGCTCCTC 692 | || | | | |||| | ||||| ||| |||| | | ||||| ||||| || Sbjct 12728988 CTTGGAAACCCTCCCTGTTCCCGTTCCACTCCTCAAACTCATTGAAACACTATGCTCTTC 12728929 Query 693 CCAGCCAGAGTT---CCCACATTATGGGAAAGTTTACCCCCGCATTCCTGCGAGCCCAGG 749 |||||||||||| || ||| |||||||||| ||||| || || |||| ||||| Sbjct 12728928 CCAGCCAGAGTTTCCTCCTCATCATGGGAAAGTGTACCCTCGAATCCCTGTCCAACCAGG 12728869 Query 750 ACCAAGACGCCGAGACATGTTC---TCAAAGAACGTCC---CAAGCGCCCAATTCTTACC 803 || || || ||| ||| ||| | |||| ||| ||| ||||| || Sbjct 12728868 GCCGTCTCGACGTGACGCATTCATGAGAAATGATGTCCTTGAAAG---CCACTTCTTGCC 12728812 Query 804 CAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACGG---ACTTTCTGAGGGTGA 860 ||||| ||||| |||||||| ||| || | | ||| || | | ||||| || || Sbjct 12728811 TAACGTCCCTGGCATTTTCGCCCTCCTCGAAGACCTCAACCGTTTATTTTCTCAG---GA 12728755 Query 861 ACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGAGGC---CAGTAA 917 | || | || ||||||||| | | ||||||||| || || || | || | || Sbjct 12728754 CCCTCCCGTATATCCGAAAAGAGACAAACACATTCCCGTTACGGAAAATGCTGTCTCTAC 12728695 Query 918 CTTCGGTTTCAAGGCCTTCGCCGCTTTTCCAAACAGAATCCAGCGCGATCGTTGGATGGT 977 |||||| |||| |||| | | | | | || | | | || ||| | Sbjct 12728694 CTTCGGACACAAGACCTTTGGCCTCCATGCTGATAGGACCGAAGCTGAAAAATGGTCACT 12728635 Query 978 TAGCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATGAATGAAGCGTTCGC 1037 | || || || | || || || ||||||||||| ||| ||||||| ||||| || Sbjct 12728634 TGTTTCTCCTGGTTTACAATACCCTTGTGAAGCCGATCAAAAGCTGAATGAGGCGTTTGC 12728575 Query 1038 TGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAGATGACAATCTCTCCACCAT 1097 |||||| | | | |||||||| ||||| | | ||| || | ||| || || Sbjct 12728574 TGAACGCTACCACGATTTTGAGTTTCCGGTCACCGCTGCAACCGATAGCCTCAGCAAAAT 12728515 Query 1098 CACCAACTTCCTCCACATG--AGGAAAAGTATGGCTTGGTTCATCCGGGCCAAGGAAGTC 1155 | || |||||||||||| | | ||| ||||||||||||| | | ||| ||||| Sbjct 12728514 CTCCTCATTCCTCCACATGAAACGTAAA--ATGGCTTGGTTCACTCATGTCAAAGAAGTT 12728457 Query 1156 GCCTGCTCGGCCGCTAGATTCTTTT-CAGACTCTGGCACTCTCGCCGACTGTTCTCCACA 1214 || ||| | ||| | |||||| || || || ||||| | ||||| || ||||| Sbjct 12728456 GCTAACTCTGTTGCT-GCGTCTTTTGAAGGATCCGGTACTCTTGATGACTGCTCCCCACA 12728398 Query 1215 CGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTCCTCCACCTGAGGAGAC-TTTTG 1273 || ||||||| ||||| |||| | | || |||| || || | || Sbjct 12728397 TGGCGTGGTCTCTAACCAAGTCATGGCCTGTCTGTCT-CTCC------CGAAACATCTTC 12728345 Query 1274 CTGATC--CCCGCTT-CTCCGCCGATCCAAGAGCCCTCTATCCCTTCAGTTTCAAGCTGA 1330 | || | || ||| | |||| ||| | | || ||| ||||| | |||||| | Sbjct 12728344 CGGAGCCACCTACTTGCACCGCTGATAAATGTGCAACCTACGAGTTCAGCTACAAGCTCA 12728285 Query 1331 AGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAGCCTTCTCCCAGACGC 1390 | ||||| || ||||||||||| | ||||| |||||||| || || ||||| ||||| | Sbjct 12728284 AAAGCACAGCTCACAACCTCCCAGCCCTTGCAGAAGCTGCTGCCGCGTTCTCTCAGACTC 12728225 Query 1391 ACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGGTCAAAAGACCGACGAAT 1450 | || |||| ||||| | | || | | | | || || |||| | | | || Sbjct 12728224 ATATTAGGATGTTTCCTAACCATCCCTACCTCAGGACATTCGGATAAAA-AACTCCTGAT 12728166 Query 1451 CA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCACCGACGACACCTCCTAC 1509 || ||||| || ||| ||| ||||||||||||||| || ||||| ||| ||||||| Sbjct 12728165 CATGGCCCGTTATGGAACAAAAGGCCCATTGGCTCCGGCATTACCGATAACAGCTCCTAC 12728106 Query 1510 CTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 |||| ||||||| | ||||||||| ||| |||| Sbjct 12728105 CTCATCATCCCATCGATGGTCAAGCAAGCGCTCA 12728072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5531167453994