Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq11694 183 3e-43 seq28319 140 4e-30 >seq11694 Length=9610 Score = 183 bits (202), Expect = 3e-43 Identities = 603/918 (66%), Gaps = 42/918 (5%) Strand=Plus/Minus Query 650 TTCCAGGCCCACTTCTCGGACTCTTCAAGACACTCTGCTCCTCCCAGCCAGAGTTCCCAC 709 |||| | ||||| ||| |||||| | ||||| ||||| |||||||||||||| || | Sbjct 8621 TTCCCGTTCCACTCCTCAAACTCTTTGAAACACTATGCTCTTCCCAGCCAGAGTTTCCTC 8562 Query 710 ---ATTATGGGAAAGTTTACCCCCGCATTCCTGCGAGCCCAGGACCAAGACGCCGAGACA 766 ||||||||||||| ||| | || || | || ||||| || || || ||| Sbjct 8561 CTCATTATGGGAAAGTGTACTCTCGAATCCTTGTCCAACCAGGGCCGTCTCGACGTGACG 8502 Query 767 TGTTCTC---AAAGAACGTCCC---AAGCGCCCAATTCTTACCCAACGTTCCTGGTATTT 820 ||| ||| | |||| |||| || ||||| || ||||| |||| |||| Sbjct 8501 CATTCATGAGAAATGATGTCCTTGAAAGC---CACTTCTTGCCTAACGTCCCTGACATTT 8445 Query 821 TCGCACTCATCCACCATCTCCACGG---ACTTTCTGAGGGTGAACACCCGATTTACCCGA 877 |||| ||| || | | ||| || | | ||||| ||| | |||| | | |||| Sbjct 8444 TCGCCCTCCTCGAAGACCTCAACCGTTTATTTTCTCAGGACC--CTCCCG-TATGTCCGA 8388 Query 878 AAAGAAAAAGACACATTCCTGTCACTGAGGAGGC---CAGTAACTTCGGTTTCAAGGCCT 934 ||||| | ||||||||| || || || | || | || |||||| |||| ||| Sbjct 8387 AAAGAGGCAAACACATTCCCGTTACGGAAAATGCTGTCTCTACCTTCGGACACAAGACCT 8328 Query 935 TCGCCGCTTTTCCAAACAGAATCCAGCGCGATCGTTGGATGGTTAGCTCCCCCGGCCTCC 994 | | | | | | || | | | || ||| || || || || | | Sbjct 8327 TTGGCCTCCATGCTGATAGGACCGAAGCTGAAAAATGGTCACTTGTTTCTCCTGGTTTAC 8268 Query 995 AGTATCCCTGTGAAGCCGACATGAAGATGAATGAAGCGTTCGCTGAACGTTTCTATGATT 1054 | || || ||||||||||| ||| ||||||| ||||| |||||||| | | | |||| Sbjct 8267 AATACCCTTGTGAAGCCGATCAAAAGCTGAATGAGGCGTTTGCTGAACGCTACCACGATT 8208 Query 1055 TTGACTTTCCTGCCTTTAACGCAGATGACAATCTCTCCACCATCACCAACTTCCTCCACA 1114 |||| ||||| | | ||| || | ||| || ||| || |||||||||| Sbjct 8207 TTGAGTTTCCGGTCACCGCTGCAACCGATAGCCTCAGCAAAATCTCCTCATTCCTCCACA 8148 Query 1115 TGAGGAAAAGTATGGCTTGGTTCATCCGGGCCAAGGAAGTCGCCTGCTCGGCCGCTAGAT 1174 ||| | |||| ||||||||| | | ||| ||||| || ||| | ||| | Sbjct 8147 TGAAACGTAATATGCCTTGGTTCACTCATGTCAAAGAAGTTGCTAACTCTGTTGCT-GCG 8089 Query 1175 TCTTTT-CAGACTCTGGCACTCTCGCCGACTGTTCTCCACACGGTCTGGTCTCAAACCAG 1233 |||||| || || || ||||| | |||| || ||||| || ||||||| ||||| Sbjct 8088 TCTTTTGAAGGATCCGGTACTCTTGATAACTGCTCCCCACATGGCGTGGTCTCTAACCAA 8029 Query 1234 ATCATTGTTGCGATTACTCCTCCACCTGAGGAGAC-TTTTGCTGATC--CCCGCTT-CTC 1289 |||| || | || |||| || || | || | || | || ||| | | Sbjct 8028 GTCATGGTCTGTCTGTCT-CTCC------CGAAACATCTTCCGGAGCCACCTACTTGCAC 7976 Query 1290 CGCCGATCCAAG--AGCCCTCTATCCCTTCAGTTTCAAGCTGAAGAGCACCGCCCACAAC 1347 ||| ||| ||| || ||| ||||| | |||||| || ||||| || |||||| Sbjct 7975 CGCTGAT--AAGTATGCAACCTACGAGTTCAGCTACAAGCTCAAAAGCACAGCTCACAAC 7918 Query 1348 CTCCCCCCACTTGCGGAAGCTGCCGCAGCCTTCTCCCAGACGCACATCCGGATTTTTCCG 1407 ||||| | ||||| |||||||| || || ||||| ||||| || || |||| ||||| Sbjct 7917 CTCCCAGCCCTTGCAGAAGCTGCTGCCGCGTTCTCTCAGACTCATATTAGGATGTTTCCT 7858 Query 1408 GAATA-CCCGTTGGCCGGAAACTTTGGTCAAAAGACCGACGAATCA-GGCCCCTTTTGGG 1465 | | ||| | ||| | | | ||||| | | | |||| ||||| || ||| Sbjct 7857 AACCATCCCTACCTCAGGATATTCGGATCAAA--AACTCCTGATCATGGCCCGTTCTGGA 7800 Query 1466 ACATCAGGCCCATTGGCTCCAGCCCCACCGACGACACCTCCTACCTCACCATCCCACCCA 1525 ||| ||||||||||||||| || ||||| ||| ||||||||||| ||||||| | | Sbjct 7799 ACAAAAGGCCCATTGGCTCCGGCATTACCGATAACAGCTCCTACCTCATCATCCCATCGA 7740 Query 1526 TGGTCAAGGCAGCACTCA 1543 |||||||| ||| |||| Sbjct 7739 TGGTCAAGCAAGCGCTCA 7722 >seq28319 Length=32640 Score = 140 bits (154), Expect = 4e-30 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 395 GCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGACTACATTCTTCACTCTATCA 454 ||| ||||||| ||||||| ||||| || ||||||||||||||||| | |||||||| | Sbjct 22814 GCAAGCTCTCATACTACTATCCTTCGTGTCACATGATGGACTACATAGTCCACTCTATGA 22755 Query 455 ATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAACTCCAAACTACCACCCTTACA 514 | | || || ||||||| || || |||||| ||| ||||| ||||| |||||||||| Sbjct 22754 ACACGACGCTTTGTGATAGTTTTTATTTCAAGCGAGCCACTCCCAACTATCACCCTTACA 22695 Query 515 TTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTG 554 |||||| |||||| || ||||| |||||| | || || Sbjct 22694 TTCTCCTCCTCTACGGTGGCGTTCTCTTCTGGATCCAATG 22655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5531108432850