Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq153354 235 6e-59 seq196779 100 3e-18 >seq153354 Length=18567 Score = 235 bits (260), Expect = 6e-59 Identities = 754/1158 (65%), Gaps = 60/1158 (5%) Strand=Plus/Minus Query 408 CTACTACCCTTCCTGCCACATGATGGACTACATTCTTCACTCTATCAATTCAACTCTCTG 467 |||||||||||| ||||||||||| | |||||| | ||| |||| || | || || || Sbjct 14803 CTACTACCCTTCGTGCCACATGATAGGCTACATAGTCCACACTATGAACACGACGCTTTG 14744 Query 468 TGATAATTACTACTTCAAGAGAGAAACTCCAAACTACCACCCTTACATTCTCCGACTCTA 527 ||||| || || |||||| ||| |||||| ||||| ||||| ||||| || || ||||| Sbjct 14743 TGATAGTTTTTATTTCAAGCGAGCAACTCCCAACTATCACCCCTACATCCTTCGTCTCTA 14684 Query 528 C-TTCGGAGTTCTTTTCTGGGTTCAGTGCTTGCGCGCTGGAAATGATGTTCAGGTCATTA 586 | || |||| || ||| | || || | | ||||||||||||| | || ||| Sbjct 14683 CGGGTGGCATTCTCTTTTGGATCCAATGTCTTAGACCTGGAAATGATGTGAACGTTCTTA 14624 Query 587 ATGACCTACACTACGATTTCTTGCAGCGTTTCCTAGACTGCAATCCTCTC---GAGTCTT 643 | || | || |||| ||| | | || || | || ||||| |||| || | Sbjct 14623 CTAACGTTCAACACGAGTTCCTCAACCGGCTCTTCGA---CAATCATCTCTTGGAAACCC 14567 Query 644 TGGCCATTCCAGGCCCACTTCTCGGACTCTTCAAGACACTCTGCTCCTCCCAGCCAGAGT 703 | | |||| || || || |||||||| ||| | |||| ||||| ||||| || |||| Sbjct 14566 TCGATGTTCCCGGTCCGCTCCTCGGACTTTTCGAAGCACTATGCTCTTCCCAACCGGAGT 14507 Query 704 -TC--CCACATTATGGGAAAGTTTACCCCCGCATTCCTGCGAGCCCAGGACCAAGACGCC 760 || || |||||||||||||| ||||| ||||| |||| ||||| || || | Sbjct 14506 CTCCTCCCCATTATGGGAAAGTGTACCCTCGCATCCCTGTCCAACCAGGCCCGTCTCGAC 14447 Query 761 GAGACATGTTC---TCAAAGAACGTCC---CAAGCGCCCAATTCTTACCCAACGTTCCTG 814 | ||| ||| ||| | |||| ||| ||| ||||| || ||||| |||| Sbjct 14446 GTGACGCATTCATGAGAAATGATGTCCTTGAAAG---CCACTTCTTGCCTAACGTCCCTG 14390 Query 815 GTATTTTCGCACTCATCCACCATCTCCACGG---ACTTTCTGAGGGTGAACACCCGATTT 871 | | ||||| || | | ||||| || | | |||| || || | || | | Sbjct 14389 GAACCTTCGCCCTTCTGGAATATCTCAACCGTTTATTTTCACAG---GACCCTCCCGTCT 14333 Query 872 ACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGA---GGCCAGTAACTTCGGTTTCA 928 | ||||||||| | |||||||| || | || | | | || ||||||| || Sbjct 14332 ATCCGAAAAGAGGCAAGCACATTCCCGTTAAGGAAAATACTGTCTCTACCTTCGGTCACA 14273 Query 929 AGGCCTTCGCCGCTTTTCCAAACAGAATCCAGCGCGATCGTTGGATGGTTAGCTCCCCCG 988 || |||| | | | | | || | | | || | | ||| || || | Sbjct 14272 AGACCTTTGGTCTTCATGCTGATAGGACCGAAGCTGAAAAATAGTCACTTATTTCTCCTG 14213 Query 989 GCCTCCAGTATCCCTGTGAAGCCGACATGAAGATGAATGAAGCGTTCGCTGAACGTTTCT 1048 | | ||||| || ||||| ||| | || | ||||| || || |||||| | | | Sbjct 14212 GTTTACAGTACCCTTGTGAGGCCAATCAAAATCTAAATGAGGCATTTGCTGAATGCTACA 14153 Query 1049 ATGATTTTGACTTTCCTGCCTTTAACGCAGATGACAATCTCTCCACCATCACCAACTTCC 1108 | |||||||||||||| | | || ||| || || ||| || ||| || |||| Sbjct 14152 ACGATTTTGACTTTCCAGTCACTACTGCATCCGATAACCTCAACAAAATCTCCTCATTCC 14093 Query 1109 TCCACATGAGGAA---AAGTATGGCTTGGTTCATCCGGGCCAAGGAAGTCGCCTGCTCGG 1165 |||| |||| || ||| ||||||||||||| | | ||| ||||| || ||| Sbjct 14092 TCCAGATGA--AACGCAAG-ATGGCTTGGTTCACTCATGTCAAAGAAGTTGCTAACTCTA 14036 Query 1166 CCGCTAGATTCTTTTCAGACTCTGGCACTCTCGCCGACTGTTCTCCACACGGTCTGGTCT 1225 ||| || |||| | || |||||||| || ||||| |||||||| || |||| Sbjct 14035 TGGCTGCATCCTTTGAAAGATCCGGCACTCTTGCTGACTGCTCTCCACATGGCTTGGTTG 13976 Query 1226 CAAACCAGATCATTGTTGCGATTACTCCTCCACCTGAGGAGACTTTTGCTGATCCCCGCT 1285 | ||||| |||| || | | || ||| || ||| || || | Sbjct 13975 CTAACCAAGTCATGGT--CTGTCTCT-CTCTTCCGGAGCCACCTATT------------T 13931 Query 1286 TCTCCGCCGATCCAAGAGCCCTCTATCCCTTCAGTTTCAAGCTGAAGAGCACCGCCCACA 1345 | |||| ||| | | || |||| || || | |||||| || |||| || |||| Sbjct 13930 GCACCGCTGATAAACGTGCAACCTATGAGTTTAGCTACAAGCTCAAAAGCAGAGCTCACA 13871 Query 1346 ACCTCCCCCCACTTGCGGAAGCTGCCGCAGCCTTCTCCCAGACGCACATCCGGATTTTTC 1405 || |||| | || || |||||||| || |||||||| |||||||| ||| |||| ||| Sbjct 13870 ACTTCCCGGCCCTAGCAGAAGCTGCTGCCGCCTTCTCACAGACGCATATCAGGATGTTTA 13811 Query 1406 CGGAATACCCGTTGGCCGGAAACTTTGGTCAAAAGACCGACGAATCAGGCCCCTTTTGGG 1465 | | |||| | ||| | || | || ||| | || | || | Sbjct 13810 CTAACCACCCTTACCTCGGGACATTCG-------GATCGAAAACTCCTGATCC----GAA 13762 Query 1466 ACATCAGGCCCATTGGCTCCAGCCCCACCGACGACACCTCCTACCTCACCATCCCACCCA 1525 ||| ||||||||||||||| || ||||| ||| ||||||||||| ||||||| | | Sbjct 13761 ACAAAAGGCCCATTGGCTCCGGCATTACCGATAACAACTCCTACCTCATCATCCCATCGA 13702 Query 1526 TGGTCAAGGCAGCACTCA 1543 |||||||| ||| |||| Sbjct 13701 TGGTCAAGCAAGCGCTCA 13684 >seq196779 Length=6706 Score = 100 bits (110), Expect = 3e-18 Identities = 211/313 (67%), Gaps = 15/313 (5%) Strand=Plus/Minus Query 430 ATGGACTACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGA 489 ||||||||||| | || ||||| || | || || ||||||| || || || ||| || Sbjct 3646 ATGGACTACATAGTCCATTCTATGAACACGACGCTTTGTGATAGTTTTTATTTTAAGCGA 3587 Query 490 GAAACTCCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTT 549 | ||| |||||| |||| || || ||||||| || |||| || || | Sbjct 3586 G-----CCA------CACCCT-ACATCCTTCGTCTCTACTGTGGCATTCTCTTTCGGATC 3539 Query 550 CAGTGCTTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTG 609 || || | | |||||||||||||| | || ||| | || | || | || ||| | Sbjct 3538 CATTGTCTTAGAGCTGGAAATGATGTGAACGTTCTTACTAACGTTCAACATGAGTTCCTC 3479 Query 610 CAGCGTTTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGA 669 | || || | || |||| | || | | || |||| ||||| || || || Sbjct 3478 AACCGGTTTTTCAACAATCATCCCTTGGAAACCCTCGCTGTTCCCGGCCCGCTCCTTGGG 3419 Query 670 CTCTTCAAGACACTCTGCTCCTCCCAGCCAGAGTTCCCAC---ATTATGGGAAAGTTTAC 726 || ||||| ||| | ||||| ||||| |||||||| || | ||||||||||||| ||| Sbjct 3418 CTTTTCAAAACATTATGCTCTTCCCAACCAGAGTTTCCTCCTCATTATGGGAAAGTGTAC 3359 Query 727 CCCCGCATTCCTG 739 || | ||| |||| Sbjct 3358 CCTCACATCCCTG 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5517090734792