Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_010347.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value seq763 118 1e-23 >seq763 Length=99919 Score = 118 bits (130), Expect = 1e-23 Identities = 221/324 (68%), Gaps = 18/324 (6%) Strand=Plus/Plus Query 873 TTGGAACCCCAACCTGTATTCCCAAGCTGTAGACTATGCAAGAACTCTTGGTCTCCACTT 932 |||| || | ||| |||| | |||||||| || ||||| |||| | || ||||| || Sbjct 28403 TTGGGACGCTAACGCGTATGCACAAGCTGTGGAATATGCGAGAAGCTTCGGACTCCATTT 28462 Query 933 TAATGTGGTAGATTACAAGAAGAAGCAAGGAACCGCATGGTGGTTACTTCGCCAGCACTA 992 |||||| || ||| | ||||||| || | ||| ||||||||||| | || || || Sbjct 28463 TAATGTTGTTGATCTAACAAAGAAGCGCGGTAACGCCTGGTGGTTACTGAGACAACATTA 28522 Query 993 CGAGGATCACGTCTTCGAGCTGCAAGTCCCGCTACCTGAGGTAAACTTTACTTCTGCGAT 1052 | || ||| || | ||||| | ||||| || |||| |||||||| || Sbjct 28523 CTCTGA---------AGAGTTGAAGCTCCCGTTCCCTGAAGTCAACTACACTTCTGCAAT 28573 Query 1053 GGCTATAACTCACACTTTATTCCT--TGAAGGAGAAGC-----TGC--TGACCCATCAAA 1103 |||| | || |||| | | ||||| | || |||||| || |||||||||||| Sbjct 28574 GGCTGTCACACACAGTCTCTTCCTACTCAATAAGAAGCACGAGAGCCTTGACCCATCAAA 28633 Query 1104 CGCGGTATTCGATCTCACCCCAGTCGGAGCCGACACATACGGCTACATTCTGAGAGAGCC 1163 ||| | ||||||||||| || ||| | || || || |||||||| | || || Sbjct 28634 CGCTATTTTCGATCTCACTCCTTGCGGTGATGATGACTATGGTTACATTCTACGTGATCC 28693 Query 1164 ACACTTCGGAATCAATGTTACCAC 1187 ||| || ||||| || ||||| Sbjct 28694 TCACCATGGCATCAACGTCACCAC 28717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4642814701460