Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Barbarea_20vulgaris_20[genbank_20GCA_5F001920985.1_202016-12-23] 7,810 sequences; 167,352,128 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq230 206 3e-50 >seq230 Length=118813 Score = 206 bits (228), Expect = 3e-50 Identities = 480/720 (67%), Gaps = 18/720 (3%) Strand=Plus/Minus Query 357 TGGGTTCCTTAGGACCCACATCCTACACCCTACACAGGGCAGGCTCTCACACTACTACCC 416 ||| ||| || | | | | ||| | || || || || | ||||||||| |||||||||| Sbjct 116768 TGGTTTCATTTGAAACAAAATCGTGCATCCCACCCAAAGTAGGCTCTCATACTACTACCC 116709 Query 417 TTCCTGCCACATGATGGACTACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTA 476 ||||||||||||||||||||||| | ||| |||| || || || ||||||| || Sbjct 116708 ATCCTGCCACATGATGGACTACATAGTCCACACTATGAACAGTACGCTTTGTGATAGTTT 116649 Query 477 CTACTTCAAGAGAGAAACTCCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGT 536 || |||||| | | | ||| |||| ||||||||||| |||| ||||||| || || Sbjct 116648 TTATTTCAAGCGGGCCAATCCCGACTATCACCCTTACATCTTCCGTCTCTACTGTGGCGT 116589 Query 537 TCTTTTCTGGGTTCAGTGCTTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACA 596 ||| || ||| | || || | | |||||||||||||| | | ||| |||| | || Sbjct 116588 TCTCTTTTGGATCCAATGTCTTAGAGCTGGAAATGATGTGAATGCTCTTACTGACGTTCA 116529 Query 597 CTACGATTTCTTGCAGCGTTTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGG 656 ||| ||||| | | || || || | | ||||| | || | | || |||| || Sbjct 116528 ATACCATTTCCTTAACCGGTTTCTCTATAACCATCCTTTGGAAACCCTTCCCGTTCCCGG 116469 Query 657 CCCACTTCTCGGACTCTTCAAGACACTCTGCTCCTCCCAGCCAGAGTTCCCACATTATGG 716 || | || |||||||||| || || ||||| || ||||||||||| || ||| |||| Sbjct 116468 TCCTATCCTTTGACTCTTCAAAACTCTATGCTCTTCTCAGCCAGAGTTTCCTCATCATGG 116409 Query 717 GAAAGTTTACCCCCGCATTCCTGCGAGCCCAGGACCAAGACGCCGAGACATGTTCTCAAA 776 |||||| || || ||||| || | ||||| || || || ||| ||| Sbjct 116408 GAAAGTGTATCCTCGCATACCCACCCAACCAGGCCCGGCTCGACGTGACGCATTCATGCG 116349 Query 777 GAACGTCCC---AAGCGCCCAATTCTTACCCAACGTTCCTGGTATTTTCGCACTCATCCA 833 ||| | || ||| | | ||||| || ||||| ||||| || ||||| ||| | | Sbjct 116348 GAATTTTCCTGAAAG---CTACTTCTTGCCTAACGTCCCTGGCATCTTCGCTCTCTTGGA 116292 Query 834 CCATCTCCACGG---ACTTTCTGAGGGTGAACACCCGATTTACCCGAAAAGAAAAAGACA 890 | ||| || | | ||||| | | | || || | || || |||| | ||||| Sbjct 116291 AGACCTCAACCGTCTATTTTCTCAAGATCCTCATCCCGTCTATCCAAAAAAAGGCAGACA 116232 Query 891 CATTCCTGTCACTGAGGAGGC---CAGTAACTTCGGTTTCAAGGCCTTCGCCGCTTTTCC 947 ||||||||| | || | || | || ||| ||| |||| |||| | | | | Sbjct 116231 CATTCCTGTTGCGGAAAATGCCGTCTCTACCTTTGGTCACAAGACCTTTGGTGTACATAC 116172 Query 948 AAACAGAATCCAGCGCGATCGTTGG---ATGGTTAGCTCCCCCGGCCTCCAGTATCCCTG 1004 | || | || || ||| | ||| || || ||| | || || || || Sbjct 116171 TGATAGGACTGAGGCTGAAAAATGGTCACTCGTT---TCTCCTGGCATACAATACCCTTG 116115 Query 1005 TGAAGCCGACATGAAGATGAATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCC 1064 ||||||||| ||| ||||||| |||| |||||||| | | | |||||| |||||| Sbjct 116114 TGAAGCCGATCAAAAGCTGAATGAGTCGTTTGCTGAACGCTACGACGATTTTATCTTTCC 116055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532340881340