Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_009521.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value seq1396 86.0 6e-14 >seq1396 Length=1446835 Score = 86.0 bits (94), Expect = 6e-14 Identities = 167/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 818 TATGTCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATTGG 877 |||||||| ||| | || || ||||| | ||| |||||| | || |||| Sbjct 1087967 TATGTCCCAGTTATCCCTCTTACAGGACATCAATACGGACTTCCGAATAACCAAGTTTGG 1088026 Query 878 AACCCCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGGTCTCCACTTTAAT 937 |||| ||| ||| || ||||| || || ||||||| |||||| || ||||| |||||| Sbjct 1088027 GACCCTAACGCGTACGCACAAGCCGTGGAATATGCAACAAAATTCGGACTCCATTTTAAT 1088086 Query 938 GTGGTAGA-CTACACCAAGAAGCAAGGCACTGCCTGGTGGCTGTTACGCCAGCACTT--- 993 ||||| || || | | |||| | || ||||||||| | | | || ||||| Sbjct 1088087 GTGGTTGATCTGAATC-TGAAGACCTGTACCGCCTGGTGGTTACTGAGACAACACTTCTC 1088145 Query 994 TGAAGACGGAATCTTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTCGAT 1053 |||||| ||| |||||| | | ||||| | || || || |||| |||||| | || Sbjct 1088146 TGAAGA---AATGTTCGAGTCGAAGCTCCCGTTCCCGGAGGTTAACTACACTTCTGCCAT 1088202 Query 1054 GGC 1056 ||| Sbjct 1088203 GGC 1088205 Score = 78.8 bits (86), Expect = 9e-12 Identities = 70/87 (80%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 709 TCTCAAAAGGCCCAAGACCATCACGGATTTACCCGTG---GTTGCCCCATTTGCCTTTGC 765 |||||||||||| || | |||||||| ||||| ||| ||||| |||||||| ||| | Sbjct 1058726 TCTCAAAAGGCCAAAAAGAATCACGGACTTACCAGTGGTCGTTGCACCATTTGCTTTTCC 1058785 Query 766 AATACAACAACTTGGTTATGTCAACAT 792 ||| |||||||| || ||||||||| Sbjct 1058786 AATTCAACAACTCGGCGCTGTCAACAT 1058812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4623904491280