Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_010347.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value seq1396 86.0 6e-14 >seq1396 Length=1446835 Score = 86.0 bits (94), Expect = 6e-14 Identities = 179/263 (68%), Gaps = 13/263 (5%) Strand=Plus/Plus Query 873 TTGGAACCCCAACCTGTATTCCCAAGCTGTAGACTATGCAAGAACTCTTGGTCTCCACTT 932 |||| |||| ||| ||| | ||||| || || ||||||| || | || ||||| || Sbjct 1088023 TTGGGACCCTAACGCGTACGCACAAGCCGTGGAATATGCAACAAAATTCGGACTCCATTT 1088082 Query 933 TAATGTGGTAGATTACAAGAAGAAGCAAGGAACCGCATGGTGGTTACTTCGCCAGCACTA 992 ||||||||| ||| || |||| | ||||| ||||||||||| | || |||| Sbjct 1088083 TAATGTGGTTGATCTGAATCTGAAGACCTGTACCGCCTGGTGGTTACTGAGACAACACTT 1088142 Query 993 CGAGGATCACGTCTTCGAGCTGCAAGTCCCGCTACCTGAGGTAAACTTTACTTCTGCGAT 1052 | || | | |||||| | | ||||| | || ||||| |||| |||||||| || Sbjct 1088143 CTCTGAAGAAATGTTCGAGTCGAAGCTCCCGTTCCCGGAGGTTAACTACACTTCTGCCAT 1088202 Query 1053 GGCTATAACTCACACTTTAT-TCCTTGAAGGAGA-AG----CTG-----CTGACCCATCA 1101 ||| | | ||||||| | | |||| | ||| || | | |||||||||| Sbjct 1088203 GGCCGT--CACACACTTACTCTTCTTGCACAAGACAGACCACGGGGACCTTGACCCATCA 1088260 Query 1102 AACGCGGTATTCGATCTCACCCC 1124 || || | |||||||||| ||| Sbjct 1088261 AATGCTATTTTCGATCTCAACCC 1088283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4643104094704