Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq672 338 7e-90 >seq672 Length=7828947 Score = 338 bits (374), Expect = 7e-90 Identities = 811/1205 (67%), Gaps = 39/1205 (3%) Strand=Plus/Plus Query 376 ATCCTACACCCTACACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGAC 435 ||| | ||||| || || || |||||||| ||||||||||||||||||| |||||||||| Sbjct 6125064 ATCGTGCACCCAACCCAAGGTAGGCTCTCGCACTACTACCCTTCCTGCCGCATGATGGAC 6125123 Query 436 TACATTCTTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAACT 495 ||||| | | |||| || || || |||||||||| || ||||| || | | Sbjct 6125124 TACATAGTCCGTGCTATGAACATTACGCTTTGTGATAATTTTTATTTCAAAAGGGCCAAC 6125183 Query 496 CCAAACTACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTGC 555 || ||||| ||||| ||||||||||| ||||||| || || || || ||| | ||||| Sbjct 6125184 CCCAACTATCACCCCTACATTCTCCGTCTCTACTGTGGCGTGCTCTTTTGGATCCAGTGT 6125243 Query 556 TTGCGCGCTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTGCAGCGT 615 | |||||||| ||| | | | ||| ||| | || ||| ||| | | | Sbjct 6125244 CTTAAAGCTGGAAACGATCTGAATGCTCTTACTGATGTTCAATACCGGTTCCTCAACTGG 6125303 Query 616 TTCCTAGACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACTCTTC 675 ||| | ||| | |||| | || || | || |||| ||||| || |||||||||||| Sbjct 6125304 TTCTTGGACAACCATCCCTTGGAAACTCTCCCCGTTCCCGGCCCTCTCCTCGGACTCTTC 6125363 Query 676 AAGACACTCTGCTCCTCCCAGCCAGAGTTCCCACATTATGGGAAAGTTTACCCCCGCATT 735 || || |||||||| |||||||||||||| | || ||||||||| ||||| | || Sbjct 6125364 AAAACTCTCTGCTCTTCCCAGCCAGAGTTTTCTTATAGTGGGAAAGTGTACCCTCAAATC 6125423 Query 736 CCTGCGAGCCCAGGACCAAGACGCCGAGACATGTTCTCAAAGAACGTCC---CAAGCGCC 792 || || ||||| || || || ||| ||| ||| ||| ||| | Sbjct 6125424 CCCGCTCAACCAGGCCCGGCTCGACGCGACGCATTCATGCGGAATCTCCTTGAAAG---C 6125480 Query 793 CAATTCTTACCCAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACGGACTTTCT 852 | ||||| || ||||| ||||| || ||||| ||| | | | || || | || | | Sbjct 6125481 TACTTCTTGCCTAACGTCCCTGGCATCTTCGCCCTCTTGGAAGACCTTAACCGTCTGTTT 6125540 Query 853 GAGGGTGAACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGAGGC- 911 | || | || | || || |||||| | || |||||||| || || || | || Sbjct 6125541 TCGCAGGACCCTCCCGTCTATCCAAAAAGAGACAGGCACATTCCCGTAACCGAAAATGCC 6125600 Query 912 --CAGTAACTTCGGTTTCAAGGCCT----TCGCC--GCTTTTCCAAACAGAATCCAGCGC 963 | || ||||| | |||| ||| || || || |||| || | | | || Sbjct 6125601 GTCTCTACCTTCGCTCACAAGACCTTTGGTCTCCATGC-TTTCAGGACCG-AGGCTGCAA 6125658 Query 964 GATCGTTGGATGGTTAGCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATG 1023 || | | | ||| || || ||| | |||| |||||||||||||| ||| || Sbjct 6125659 AAT-GGTCTCTCGTT---TCTCCTGGCTTATAGTACCCCTGTGAAGCCGATCAAAAGCTG 6125714 Query 1024 AATGAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAGATGAC 1083 ||||| ||||| |||||||| | | ||||||||||||||| | | | || || Sbjct 6125715 AATGAGGCGTTTGCTGAACGCTACAATGATTTTGACTTTCAGGTCACTGCTGCCACCGAT 6125774 Query 1084 AATCTCTCCACCATCACCAACTTCCTCCACATGAGGAAAAGTATGGCTTGGTTCATCCGG 1143 || || | |||| || |||||||||||||| | ||||||||||||| || | Sbjct 6125775 AACCTTGAAAGCATCTCCTTCTTCCTCCACATGAAACGCAACATGGCTTGGTTCACCCAG 6125834 Query 1144 GCCAAGGAAGT--CGCCTGCTCGGCCGCTAGATTCTTTTCAGACTCTGGCACTCTCGCCG 1201 || | ||| | || | | ||| || |||| || |||||||| || || | Sbjct 6125835 TTAAAAGGAGTTGTGAATGAT--GTTGCTGCATCCTTTGAAGGATCTGGCACCCTTGCTG 6125892 Query 1202 ACTGTTCTCCACACGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTCCTCCACCTG 1261 |||| || ||||| |||| ||| | ||||| |||| || | || ||| | | Sbjct 6125893 ACTGCTCACCACATGGTCCGGTTGCTAACCAAGTCATGGT----CTGTCT-CTCTAAC-C 6125946 Query 1262 AGGAGACTTTTGCTGATC--CCCGCTT-CTCCGCCGATCCAAGAGCCCTCTATCCCTTCA 1318 ||| | || | || | || ||| | |||||| | | || ||| |||| Sbjct 6125947 CGGAACATCTTCCGGACCCACCAACTTGCATTGCCGATAAACGTGCAACCTACGAGTTCA 6126006 Query 1319 GTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAGCCT 1378 | | | |||| || ||||| || | ||||||||| | ||||||||||||| || |||| Sbjct 6126007 GCTACCAGCTCAAAAGCACAGCTCTCAACCTCCCTCTCCTTGCGGAAGCTGTTGCCGCCT 6126066 Query 1379 TCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGG-TCAA 1437 |||| |||||||| ||| |||| ||||| | | || || ||| | ||||| || | Sbjct 6126067 TCTCTCAGACGCATATCAGGATGTTTCCTAACCATCCATTCCTCGGGACGTTTGGATCGA 6126126 Query 1438 AAGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCACCGA 1496 || || | |||| ||||| || ||| | | |||||||||| |||||||| ||||| Sbjct 6126127 AA-ACTCTTG-ATCATGGCCCGTTCTGGAAAAGAAGGCCCATTGCCTCCAGCCTTACCGA 6126184 Query 1497 CGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCATCGAGAAAGGCTC 1556 ||| ||||||||||||||||||| | |||||||| |||| ||| |||||| | Sbjct 6126185 TAACAGCTCCTACCTCACCATCCCAACGATGGTCAACCAAGCATTCAAATCTAAAGGC-C 6126243 Query 1557 CAGCC 1561 ||||| Sbjct 6126244 CAGCC 6126248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5532685720016