Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011557.1 Length=1783 Score E Sequences producing significant alignments: (Bits) Value seq97 113 5e-22 seq11 107 2e-20 >seq97 Length=594313 Score = 113 bits (124), Expect = 5e-22 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 387 AACACCTTTGTCCCTGATGCTCAGATGCTATTCCATGTCCTTGGAATCTGTGATCAAATG 446 ||| | || ||||| || ||||| ||||||||||| ||||| |||||||| || || | Sbjct 29070 AACTCTTTCGTCCCCGACGCTCAAATGCTATTCCACGTCCTCGGAATCTGCGACCAGCTA 29129 Query 447 ATGCTTTCAACTGATCGCTTTACGCGTTCATCTCCTGCTTGGATCCCCATCGTCTCACAG 506 ||||| | || | |||| ||||| |||||| | ||| |||| |||||||||||| Sbjct 29130 ATGCTCACCACCACCCAGTTTATCCGTTCTTCTCCTTCCTGGCTCCCGATCGTCTCACAG 29189 Query 507 CTTTACATCTCTGTACTCTGGA 528 || ||||||||| | ||||||| Sbjct 29190 CTCTACATCTCTCTCCTCTGGA 29211 >seq11 Length=45114658 Score = 107 bits (118), Expect = 2e-20 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 365 CACTGTGCCCCGTCGCGGTGTTAACACCTTTGTCCCTGATGCTCAGATGCTATTCCATGT 424 ||| || | || || | || | ||| | || ||||| || ||||| ||||||||||| || Sbjct 36437757 CACCGTCCACCCTCCCCGTTTCAACTCTTTCGTCCCCGACGCTCAAATGCTATTCCACGT 36437816 Query 425 CCTTGGAATCTGTGATCAAATGATGCTTTCAACTGATCGCTTTACGCGTTCATCTCCTGC 484 ||| |||||||| || || | ||||| | || | ||| || || |||||| | Sbjct 36437817 CCTCGGAATCTGCGACCAGCTAATGCTCACCACCACCCAGTTTCTCCGGTCTTCTCCTTC 36437876 Query 485 TTGGATCCCCATCGTCTCACAGCTTTACATCTCTGTACTCTGGA 528 ||| ||||||| ||||||||||| ||||||||| | ||||||| Sbjct 36437877 CTGGCTCCCCATTGTCTCACAGCTCTACATCTCTCTTCTCTGGA 36437920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5596718174784