Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_022615.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value seq11 105 8e-20 seq97 87.8 2e-14 >seq11 Length=45114658 Score = 105 bits (116), Expect = 8e-20 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 387 TCTTT-GTCCCTGACTCTCAGATGCTCTTCCATGTGCTGAGTATTTGTGACCAAATGATG 445 ||||| ||||| ||| |||| ||||| ||||| || || | || || ||||| | ||| Sbjct 36437782 TCTTTCGTCCCCGACGCTCAAATGCTATTCCACGTCCTCGGAATCTGCGACCAGCTAATG 36437841 Query 446 AACTCTACTGAACGATTTCTTCGTTCTTCTCCTGCCTGGATGCCCATTGTCTCACAGCTC 505 | | || | ||||| || ||||||||| ||||| | |||||||||||||||||| Sbjct 36437842 CTCACCACCACCCAGTTTCTCCGGTCTTCTCCTTCCTGGCTCCCCATTGTCTCACAGCTC 36437901 Query 506 TACATTTCAGTTCTCTGGAATGTCATGATTCTC 538 ||||| || ||||||||||| ||| || ||| Sbjct 36437902 TACATCTCTCTTCTCTGGAATTTCACCATCCTC 36437934 >seq97 Length=594313 Score = 87.8 bits (96), Expect = 2e-14 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 387 TCTTT-GTCCCTGACTCTCAGATGCTCTTCCATGTGCTGAGTATTTGTGACCAAATGATG 445 ||||| ||||| ||| |||| ||||| ||||| || || | || || ||||| | ||| Sbjct 29073 TCTTTCGTCCCCGACGCTCAAATGCTATTCCACGTCCTCGGAATCTGCGACCAGCTAATG 29132 Query 446 AACTCTACTGAACGATTTCTTCGTTCTTCTCCTGCCTGGATGCCCATTGTCTCACAGCTC 505 | | || | ||| | |||||||||||| ||||| | || || |||||||||||| Sbjct 29133 CTCACCACCACCCAGTTTATCCGTTCTTCTCCTTCCTGGCTCCCGATCGTCTCACAGCTC 29192 Query 506 TACATTTCAGTTCTCTGGAATGTCATGATTCTC 538 ||||| || | |||||||| ||| || ||| Sbjct 29193 TACATCTCTCTCCTCTGGAACTTCACCATCCTC 29225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5769515648448