Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_008190.1 Length=1791 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-14 >seq2 Length=27864329 Score = 87.8 bits (96), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 10/141 (7%) Strand=Plus/Minus Query 410 CTTCTACTATCTCAACAAGATGGACTCCTTGATG--GTCCAAACTCTCAAC--TGGACAA 465 ||||||||| ||||| | |||||| | ||||| ||||| | ||| ||||| | Sbjct 5330274 CTTCTACTACCTCAATAGCATGGACCACCTGATGACGTCCACAA----AACGATGGACCA 5330219 Query 466 ACAACTGCTCTGGA-TGGGTTCCCCCATACTCCCAGATCTACATCAGCATGCTTCTCTAT 524 | |||||| |||| ||||| || || ||||| |||||||||||| |||||| |||||| Sbjct 5330218 ATAACTGCA-TGGACTGGGTGCCTCCTTACTCTCAGATCTACATCGCCATGCTGCTCTAT 5330160 Query 525 CTTCAAGTAATGCGCGCCATG 545 ||||| ||||| |||||| Sbjct 5330159 ATTCAAACTATGCGAGCCATG 5330139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5619995605238