Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_011557.1 Length=1783 Score E Sequences producing significant alignments: (Bits) Value seq4 113 5e-22 >seq4 Length=18984343 Score = 113 bits (124), Expect = 5e-22 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 387 AACACCTTTGTCCCTGATGCTCAGATGCTATTCCATGTCCTTGGAATCTGTGATCAAATG 446 ||| | || ||||| || ||||| ||||||||||| ||||| |||||||| || || | Sbjct 14717204 AACTCTTTCGTCCCCGACGCTCAAATGCTATTCCACGTCCTCGGAATCTGCGACCAGCTA 14717145 Query 447 ATGCTTTCAACTGATCGCTTTACGCGTTCATCTCCTGCTTGGATCCCCATCGTCTCACAG 506 ||||| | || | |||| ||||| |||||| | ||| |||| |||||||||||| Sbjct 14717144 ATGCTCACCACCACCCAGTTTATCCGTTCTTCTCCTTCCTGGCTCCCGATCGTCTCACAG 14717085 Query 507 CTTTACATCTCTGTACTCTGGA 528 || ||||||||| | ||||||| Sbjct 14717084 CTCTACATCTCTCTCCTCTGGA 14717063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5594406552966