Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_022615.1 Length=1837 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-14 >seq4 Length=18984343 Score = 87.8 bits (96), Expect = 2e-14 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 387 TCTTT-GTCCCTGACTCTCAGATGCTCTTCCATGTGCTGAGTATTTGTGACCAAATGATG 445 ||||| ||||| ||| |||| ||||| ||||| || || | || || ||||| | ||| Sbjct 14717201 TCTTTCGTCCCCGACGCTCAAATGCTATTCCACGTCCTCGGAATCTGCGACCAGCTAATG 14717142 Query 446 AACTCTACTGAACGATTTCTTCGTTCTTCTCCTGCCTGGATGCCCATTGTCTCACAGCTC 505 | | || | ||| | |||||||||||| ||||| | || || |||||||||||| Sbjct 14717141 CTCACCACCACCCAGTTTATCCGTTCTTCTCCTTCCTGGCTCCCGATCGTCTCACAGCTC 14717082 Query 506 TACATTTCAGTTCTCTGGAATGTCATGATTCTC 538 ||||| || | |||||||| ||| || ||| Sbjct 14717081 TACATCTCTCTCCTCTGGAACTTCACCATCCTC 14717049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5767132655802