Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_009521.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value seq13 143 2e-31 seq12 113 4e-22 >seq13 Length=24101694 Score = 143 bits (158), Expect = 2e-31 Identities = 252/359 (70%), Gaps = 16/359 (4%) Strand=Plus/Minus Query 709 TCTCAAAAGGCCCAAGACCATCACGGA---TTTACCCGTG---GTTGCCCCATTTGCCTT 762 |||||||||||| || |||||||| ||||| ||| ||||| |||||||| || Sbjct 21921223 TCTCAAAAGGCCAAAAGGAATCACGGACGTCTTACCTGTGGTTGTTGCACCATTTGCTTT 21921164 Query 763 TGCAATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGA-GGTATG 821 |||||| || ||||| || |||||||||| | || ||| || | || | | | |||| Sbjct 21921163 TGCAATTCAGCAACTCGGCGTTGTCAACATCACTAACCTCCCT-CATAAGGCACGTTATG 21921105 Query 822 TCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATTGGAACC 881 |||| ||| | || || ||||| | ||| |||||| | || |||||||| Sbjct 21921104 TCCCAGTTCTCCCTCCTACAGGACATCAGTACGGACTTCCGAATAACCAAGTTTGGAACC 21921045 Query 882 CCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGGTCTCCACTTTAATGTGG 941 | | ||| || |||||||| || ||||| ||||| || || ||||||||| |||||| Sbjct 21921044 CTGAGGCGTACGCACAAGCTGTGGAATATGCTAGAAACTTCGGACTCCACTTTCATGTGG 21920985 Query 942 TAGACTAC-ACCAAGAAGCAAGGCACTGCCTGGTGGCTGTTACGCCAGCACTT---TGAA 997 | || ||| | | |||| || || ||||||||| | | | || ||||| |||| Sbjct 21920984 TTGA-TACGAACCTGAAGACCGGTACCGCCTGGTGGTTACTGAGACAACACTTCTCTGAA 21920926 Query 998 GACGGAATCTTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTCGATGGC 1056 || ||| |||||| | | ||||| | || || || |||| |||||| | ||||| Sbjct 21920925 GA---AATGTTCGAGTTAAAGCTCCCGTTCCCGGAGGTAAACTACACTTCTGCCATGGC 21920870 >seq12 Length=33044737 Score = 113 bits (124), Expect = 4e-22 Identities = 252/366 (69%), Gaps = 27/366 (7%) Strand=Plus/Plus Query 709 TCTCAAAAGGCCCAAGACCATCACG---GATTTACCCGTG---GTTGCCCCATTTGCCTT 762 |||||||||||| || |||||| || ||||| ||| ||||| |||||| | || Sbjct 17265934 TCTCAAAAGGCCAAAAGGAATCACGGACGACTTACCTGTGGTCGTTGCACCATTTACTTT 17265993 Query 763 TGCAATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGA-GGTATG 821 |||||| |||||||| || |||||||||| | || ||| || | || | | | |||| Sbjct 17265994 TGCAATTCAACAACTCGGCGCTGTCAACATCACTAACCTCCCT-CATAAGGCACGTTATG 17266052 Query 822 TCCCTGTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACA--CAA--TTGG 877 |||| | | | || || |||| | ||| |||||| ||| ||| |||| Sbjct 17266053 TCCCAGCTCTCCCTCCTACAAGACATCAGTACGGACTTCCGA----ACAACCAAGTTTGG 17266108 Query 878 AACCCCAACCTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGGTCTCCACTTTAAT 937 |||||| | ||| |||||||||| || | ||| ||||| ||||| || |||||| | Sbjct 17266109 AACCCCGAGGCGTACACCCAAGCTGTGGAATTTGCTAGAAACTTTGGACTTCACTTTCAC 17266168 Query 938 GTGGTAGA-CTACACCAAGAAGCAAGGCACTGCCTGGTGG---CTGTTACGCCAGCACTT 993 ||||| || || ||| |||| || || |||||||| ||| || || ||||| Sbjct 17266169 GTGGTTGATCTTAACC-TGAAGACCGGTACCCCCTGGTGGTTACTGAGACAACA-CACTT 17266226 Query 994 ---TGAAGACGGAATCTTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTC 1050 ||| || ||| |||||| || | ||||| | || || || |||| |||||| Sbjct 17266227 GTCTGA--ACAAAATGTTCGAGTTGAAGCTCCCGTTCCCCGAGGTAAACTACACTTCTGA 17266284 Query 1051 GATGGC 1056 ||||| Sbjct 17266285 CATGGC 17266290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4622171774440