Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_010347.1 Length=1485 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-29 seq13 134 1e-28 seq8 131 2e-27 seq12 100 3e-18 >seq2 Length=29139806 Score = 136 bits (150), Expect = 4e-29 Identities = 412/625 (66%), Gaps = 46/625 (7%) Strand=Plus/Minus Query 619 CAATTGGCCATTGGTGCAATGCTTGCCACATACTTTAAGCTTCGCGCCCTCAT--TTACC 676 ||| | || ||||| ||| |||| || || | || || || || || || |||| Sbjct 1903319 CAACTCGCTATTGGGGCATGTGTTGCGACTTATCTCAAACTACGTGCTCTTATAGTTACT 1903260 Query 677 TAGATCTCCCTGATCGCTACACTTTAGGAAGTCTCAAAAGGCCCAAAGCAATCGCT---G 733 | || ||||||| | || |||| || |||||||||||| |||| |||| | | Sbjct 1903259 GA-AT-TCCCTGACGGGTATACTTCAGCTTATCTCAAAAGGCCAAAAGGAATCACGTACG 1903202 Query 734 ACCTACCAGTGATCG---CCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAACG 790 || |||| ||| ||| | || || || |||||||| |||||||| || ||||||| Sbjct 1903201 ACTTACCTGTGGTCGTTGCACCATTTGCTTTTGCAATTCAACAACTCGGAGCTGTCAACA 1903142 Query 791 TCGCCAATCTCACCAGAGAGAGGAGGTT-TGTCCCAGTCTTTCC----AGAAGACGACCA 845 || | || ||| || | | | | ||| ||||||||| | || | | ||| | | Sbjct 1903141 TCACTAACCTC-CCTCATAAGGCACGTTATGTCCCAGTTCTCCCTCCTACAGGACATCAA 1903083 Query 846 CACCTTTGGAGTCCCCCTTGAACATCA----TTGGAACCCCAACCTGTATTCCCAAGCTG 901 || ||| | || || | || ||||||||| | ||| | ||||||| Sbjct 1903082 TAC----GGACTTCC----GAGAAACAAAGTTTGGAACCCTGAGGCGTACGCACAAGCTG 1903031 Query 902 TAGACTATGCAAGAACTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAG 961 | || ||||| |||| | || ||||||||| ||||||| ||| || |||| | Sbjct 1903030 TGGAATATGCTAGAAACTTCGGACTCCACTTTCATGTGGTTGATACGAACCTGAAGACCG 1902971 Query 962 GAACCGCATGGTGGTTACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCC 1021 | ||||| ||||||||||| | || |||| | || | | |||||| || | ||| Sbjct 1902970 GTACCGCCTGGTGGTTACTGAGACAACACTTCTCTGAAGAAATGTTCGAGTTGAAGCTCC 1902911 Query 1022 CGCTACCTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACACTTTATTCCT--TGA 1079 || | || |||||||||| |||||||| ||||| | || ||| | | ||||| | | Sbjct 1902910 CGTTCCCGGAGGTAAACTACACTTCTGCCATGGCACTCACACACTCACTCTTCCTGCTCA 1902851 Query 1080 AG---------GAGAAGCTGC-TGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCG 1129 || ||| || | ||||||||||||||| | |||||||||| ||| | Sbjct 1902850 AGAAAGACAACGAGGAGGACCTTGACCCATCAAACGCTATTTTCGATCTCAACCCTTGTG 1902791 Query 1130 GAG---CCGACACATACGGCTACATTCTGAGAGAGCCACACTTCGGAATCAATGTTACCA 1186 ||| ||||| ||||| | ||| || | | || ||| || ||||| || |||| Sbjct 1902790 GAGAGTCCGAC---TACGGTTCCATACTACGTAACCCTCACCCTGGCATCAACGTCACCA 1902734 Query 1187 CATACCAGGTCATTGACGGAAGCGC 1211 | | | | |||||| | ||| || Sbjct 1902733 CGTTCATGACCATTGATGAAAGTGC 1902709 >seq13 Length=24101694 Score = 134 bits (148), Expect = 1e-28 Identities = 414/628 (66%), Gaps = 32/628 (5%) Strand=Plus/Minus Query 619 CAATTGGCCATTGGTGCAATGCTTGCCACATACTTTAAGCTTCGCGCCCTCATT-TACCT 677 ||| | || ||||| ||| |||| || || | || || || || || ||| || | Sbjct 21921315 CAACTCGCTATTGGGGCATGTGTTGCGACTTATCTCAAACTACGTGCTCTAATTATAGTT 21921256 Query 678 A--GATCTCCCTGATCGCTACACTTTAGGAAGTCTCAAAAGGCCCAAAGCAATCGCTGAC 735 | || ||||||| | ||||||| || |||||||||||| |||| |||| | ||| Sbjct 21921255 ACTGAATTCCCTGACAGGTACACTTCAGCTTATCTCAAAAGGCCAAAAGGAATCACGGAC 21921196 Query 736 CT---ACCAGTGATCG---CCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAAC 789 | ||| ||| | | | || || || |||||||| || ||||| || ||||||| Sbjct 21921195 GTCTTACCTGTGGTTGTTGCACCATTTGCTTTTGCAATTCAGCAACTCGGCGTTGTCAAC 21921136 Query 790 GTCGCCAATCTCACCAGAGAGAGGAGGTT-TGTCCCAGTCTTTCCAGA-AGACGACCACA 847 || | || ||| || | | | | ||| ||||||||| | || | | ||| || Sbjct 21921135 ATCACTAACCTC-CCTCATAAGGCACGTTATGTCCCAGTTCTCCCTCCTACAGGACATCA 21921077 Query 848 CCTTTGGAGTCCCCCTTGAACATCATTGGAACCCCAACCTGTATTCCCAAGCTGTAGACT 907 | ||| | || | | || ||||||||| | ||| | |||||||| || | Sbjct 21921076 G-TACGGACTTCCGAATAACCAAGTTTGGAACCCTGAGGCGTACGCACAAGCTGTGGAAT 21921018 Query 908 ATGCAAGAACTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGAACCG 967 |||| |||| | || ||||||||| ||||||| ||| || |||| || |||| Sbjct 21921017 ATGCTAGAAACTTCGGACTCCACTTTCATGTGGTTGATACGAACCTGAAGACCGGTACCG 21920958 Query 968 CATGGTGGTTACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCCCGCTAC 1027 | ||||||||||| | || |||| | || | | |||||| | | ||||| | | Sbjct 21920957 CCTGGTGGTTACTGAGACAACACTTCTCTGAAGAAATGTTCGAGTTAAAGCTCCCGTTCC 21920898 Query 1028 CTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACACTTTATTC-CTTGAAGGA--- 1083 | |||||||||| |||||||| ||||| |||||| || | | | |||| || Sbjct 21920897 CGGAGGTAAACTACACTTCTGCCATGGC----ACTCACTTTTCCTGCTCATGAAAGATAA 21920842 Query 1084 ----GAAGCTGCTGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCGGAG---CCGA 1136 || | |||||||||||||| | |||||||||||||| |||| |||| Sbjct 21920841 CGAGGACGACCTTGACCCATCAAACGATATTTTCGATCTCACCCCTTGTGGAGAGTCCGA 21920782 Query 1137 CACATACGGCTACATTCTGAGAGAGCCACACTTCGGAATCAATGTTACCACATACCAGGT 1196 | ||||| | ||| || | | || ||| || ||||| || ||||| ||| | Sbjct 21920781 C---TACGGTTCCATACTACGTAATCCTCACCGTGG-ATCAACGTCACCACGTACATGAA 21920726 Query 1197 CATTGACGGAAGCGCTCAAGAGATAGTT 1224 ||||| | ||| || || |||| ||| Sbjct 21920725 TATTGATGAAAGTGCGAAACAGATCGTT 21920698 >seq8 Length=27720346 Score = 131 bits (144), Expect = 2e-27 Identities = 420/636 (66%), Gaps = 42/636 (7%) Strand=Plus/Plus Query 619 CAATTGGCCATTGGTGCAATGCTTGCCACATACTTTAAGCTTCGCGCCCTCAT--TTACC 676 ||| | || ||||| ||| ||||||| || | || || || || || || |||| Sbjct 21504256 CAACTCGCTATTGGGGCATGTGTTGCCACTTATCTCAAACTACGTGCTCTTATAGTTACT 21504315 Query 677 TAGATCTCCCTGATCGCTACACTTTAGGAAGTCTCAAAAGGCCCAAAGCAATCGCTGACC 736 | || ||||||| | ||||||| || ||||| |||||| |||| |||| | ||| Sbjct 21504316 GA-AT-TCCCTGACAGGTACACTTCAGCTTATCTCAGAAGGCCAAAAGGAATCACGGACG 21504373 Query 737 T---ACCAGTGATCG---CCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAACG 790 | ||| ||| ||| | || || || |||||||| |||||||| || ||||||| Sbjct 21504374 TCTTACCTGTGGTCGTTGCACCATTTGCTTTTGCAATTCAACAACTCGGCGCTGTCAACA 21504433 Query 791 TCGCCAATCTCACCAGAGAGAGGAGGTT-TGTCCCAGTCTTTCCAGA-AGACGACCACAC 848 || | || ||| || | | | | ||| ||||||||| | || | | ||| || Sbjct 21504434 TCACTAACCTC-CCTCATAAGGCACGTTATGTCCCAGTTCTACCTCCTACAGGACATCAG 21504492 Query 849 CTTTGGAGTCCCCCTTGAACATCA----TTGGAACCCCAACCTGTATTCCCAAGCTGTAG 904 | ||| | || ||| | || ||||||||| | ||| | |||||||| | Sbjct 21504493 -TACGGACTTCC----GAATAACAAAGTTTGGAACCCTGAGGCGTACACTCAAGCTGTGG 21504547 Query 905 ACTATGCAAGAACTCTT-GGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGA 963 | ||||| ||| | ||| || || ||||| | ||||| ||| || |||| || Sbjct 21504548 AATATGCTAGA-CACTTCGGACTATACTTTCACGTGGTTGATACGAACCTGAAGACCGGT 21504606 Query 964 ACCGCATGGTGGTTACTTCGCCAGCACTACGAGGATCACGTCTTCGAGCTGCAAGTCCCG 1023 ||| | ||||||||||| | || |||| | || | | |||||| || | ||||| Sbjct 21504607 ACCCCCTGGTGGTTACTGAGACAACACTTCTCTGAAGAAATGTTCGAGTTGAAGCTCCCG 21504666 Query 1024 CTACCTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACACTTTATTCCT--TGAAG 1081 | || |||||||||| |||||||| ||| | | || ||| | | ||||| | ||| Sbjct 21504667 TTCCCGGAGGTAAACTACACTTCTGCCATGACACTCACACACTCACTCTTCCTGCTCAAG 21504726 Query 1082 ---------GAGAAGCTGC-TGACCCATCAAACGCGGTATTCGATCTCACCCCAGTCGGA 1131 ||| || | ||||||||||||||| | |||||||||||||| || | Sbjct 21504727 ACAGACAACGAGGAGGACCTTGACCCATCAAACGCTATTTTCGATCTCACCCCTTGCGAA 21504786 Query 1132 G---CCGACACATACGGCTACATTCTGAGAGAGCCACACTTCGGAATCAATGTTACCACA 1188 | ||||| ||||| | ||| || | | || ||| || ||||| || ||||| Sbjct 21504787 GAGTCCGAC---TACGGTTCCATACTACGTAACCCTCACCCTGGCATCAACGTCACCACG 21504843 Query 1189 TACCAGGTCATTGACGGAAGCGCTCAAGAGATAGTT 1224 | | | |||||| | ||| || || |||| ||| Sbjct 21504844 TTCATGACCATTGATGAAAGTGCCAAACAGATCGTT 21504879 >seq12 Length=33044737 Score = 100 bits (110), Expect = 3e-18 Identities = 271/404 (67%), Gaps = 33/404 (8%) Strand=Plus/Plus Query 683 TCCCTGATCGCTACACTTTAGGAAGTCTCAAAAGGCCCAAAGCAATCGCTGACC---TAC 739 |||| || | ||||||| || |||||||||||| |||| |||| | ||| ||| Sbjct 17265909 TCCCCGACAGGTACACTTCAGCTTATCTCAAAAGGCCAAAAGGAATCACGGACGACTTAC 17265968 Query 740 CAGTGATCG---CCCCTTTCGCCTTTGCAATACAACAACTTGGTTATGTCAACGTCGCCA 796 | ||| ||| | || || | |||||||| |||||||| || ||||||| || | | Sbjct 17265969 CTGTGGTCGTTGCACCATTTACTTTTGCAATTCAACAACTCGGCGCTGTCAACATCACTA 17266028 Query 797 ATCTCACCAGAGAGAGGAGGTT-TGTCCCAG---TCTTTCC-AGAAGACGACCACACCTT 851 | ||| || | | | | ||| |||||||| || ||| | ||||| | || Sbjct 17266029 ACCTC-CCTCATAAGGCACGTTATGTCCCAGCTCTCCCTCCTACAAGACATCAGTAC--- 17266084 Query 852 TGGAGTCCCCCTTGAACATCA----TTGGAACCCCAACCTGTATTCCCAAGCTGTAGACT 907 ||| | || ||||| | |||||||||| | ||| |||||||||| || | Sbjct 17266085 -GGACTTCC----GAACAACCAAGTTTGGAACCCCGAGGCGTACACCCAAGCTGTGGAAT 17266139 Query 908 ATGCAAGAACTCTTGGTCTCCACTTTAATGTGGTAGATTACAAGAAGAAGCAAGGAACCG 967 ||| |||| |||| || |||||| | ||||| ||| || |||| || ||| Sbjct 17266140 TTGCTAGAAACTTTGGACTTCACTTTCACGTGGTTGATCTTAACCTGAAGACCGGTACCC 17266199 Query 968 CATGGTGGTTACTTCGCCAGCACTACGAG---GATC-ACGTCTTCGAGCTGCAAGTCCCG 1023 | ||||||||||| | || ||| || | || | | | |||||| || | ||||| Sbjct 17266200 CCTGGTGGTTACTGAGACAACAC-ACTTGTCTGAACAAAATGTTCGAGTTGAAGCTCCCG 17266258 Query 1024 CTACCTGAGGTAAACTTTACTTCTGCGATGGCTATAACTCACAC 1067 | || |||||||||| ||||||| ||||| |||||||| Sbjct 17266259 TTCCCCGAGGTAAACTACACTTCTGACATGGC----ACTCACAC 17266298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4641364183192