Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelina_20sativa_20[refseq_20GCF_5F000633955.1_202014-04-24] 37,212 sequences; 641,356,059 total letters Query= NC_030890.1 Length=1763 Score E Sequences producing significant alignments: (Bits) Value seq19 271 8e-70 seq1 123 3e-25 >seq19 Length=26736940 Score = 271 bits (300), Expect = 8e-70 Identities = 783/1186 (66%), Gaps = 49/1186 (4%) Strand=Plus/Minus Query 383 ACCCTACACAGGGCAGGCTCTCACACTACTACCCTTCCTGCCACATGATGGACTACATTC 442 |||| || || || | ||||| |||||||| |||||||||||||||||||||||||| Sbjct 9361464 ACCCAACCCAAGGTGGACTCTCGCACTACTATCCTTCCTGCCACATGATGGACTACATAG 9361405 Query 443 TTCACTCTATCAATTCAACTCTCTGTGATAATTACTACTTCAAGAGAGAAACTCCAAACT 502 | || |||| || || || ||| || ||| | ||||| | | | || |||| Sbjct 9361404 TCCATGCTATGAACAATACACTTTGTAATCATTTTGATTTCAAACGGGCCAACCCCAACT 9361345 Query 503 ACCACCCTTACATTCTCCGACTCTACTTCGGAGTTCTTTTCTGGGTTCAGTGCTTGCGCG 562 | |||||||| || | || ||||||| || || || || | | | |||||| | | | Sbjct 9361344 ATCACCCTTATATCATTCGTCTCTACTGTGGCGTGCTCTTTTAGATCCAGTGCCTTAGAG 9361285 Query 563 CTGGAAATGATGTTCAGGTCATTAATGACCTACACTACGATTTCTTGCAGCGTTTCCTAG 622 ||||||| ||||| | | ||| | | | || ||| ||| | | || ||| | | Sbjct 9361284 CTGGAAACGATGTGAATGCTCTTACTAATGTTCAATACCGGTTCCTCAACCGGTTCTTGG 9361225 Query 623 ACTGCAATCCTCTCGAGTCTTTGGCCATTCCAGGCCCACTTCTCGGACTCTTCAAGACAC 682 || | ||||| | || | | || |||| ||||| || |||||||||||||| |||| Sbjct 9361224 ACAACCATCCTTTGGAAATTCTCGCAGTTCCCGGCCCTCTCCTCGGACTCTTCAAAACAC 9361165 Query 683 TCTGCTCCTCCCAGCCAGAGTTCCCACATTATGGGAAAGTTTACCCCCGCATTCCTGCGA 742 ||||||| |||||||||||||| || ||| ||||||| || ||||| ||||| || | Sbjct 9361164 TCTGCTCTTCCCAGCCAGAGTTTCCTCATAATGGGAATGTATACCCTCGCATCCCCTCCC 9361105 Query 743 GCCCAGGACCAAGACGCCGAGACATGTTCTCAAAGAACGTCC---CAAGCGCCCAATTCT 799 | ||| || ||| |||||| ||| | || ||| ||| | | |||| Sbjct 9361104 AACAAGGCCCGGCACGACGAGACGAATTCATGCAAAATCTCCTTGAAAG---CTACTTCT 9361048 Query 800 TACCCAACGTTCCTGGTATTTTCGCACTCATCCACCATCTCCACGGACT---TTCTGAGG 856 | || || || || || |||||||| ||| | | | ||| || | | |||| ||| Sbjct 9361047 TGCCTAATGTCCCAGGCATTTTCGCCCTCCTAGAAGACCTCAACCGTTTGTCTTCTCAGG 9360988 Query 857 GTGAACACCCGATTTACCCGAAAAGAAAAAGACACATTCCTGTCACTGAGGAGGC---CA 913 | || |||| | |||||||||| | | ||||| || || || | | || | Sbjct 9360987 AT--ACTCCCG-TCTACCCGAAAACGGACATGCACATGCCCGTTACCAAAAATGCCGTCT 9360931 Query 914 GTAACTTCGGTTTCAAGGCCTTCGCCGCTTTTCCAAACAGAATCCAGCGCGATCGTTG-- 971 || |||||| |||| |||| | | |||| | || ||| | || || Sbjct 9360930 CTACCTTCGGCCACAAGACCTTTG----GTCTCCATGCTGA---CAGGACCGACGCTGAA 9360878 Query 972 -GATGGTTA----GCTCCCCCGGCCTCCAGTATCCCTGTGAAGCCGACATGAAGATGAAT 1026 ||||| | || || ||| ||||| |||||||||| ||| || ||||| Sbjct 9360877 AAATGGTCACTCGTTTCTCCTGGCTAACAGTACCCCTGTGAAGTCGATCAAAATCTGAAT 9360818 Query 1027 GAAGCGTTCGCTGAACGTTTCTATGATTTTGACTTTCCTGCCTTTAACGCAGATGACAAT 1086 || || || || ||||| | | |||||||||||| | | | || || || Sbjct 9360817 GAGGCCTTTGCCGAACGCTACAGAAATTTTGACTTTCAGGTCACTGCTGCCAGCGATAAC 9360758 Query 1087 CTCTCCACCATCACCAACTTCCTCCACATGAGGAAAAGTATGGCTTGGTTCATCCGGGCC 1146 || |||||| || || |||||||||| | ||||||||||||| || || Sbjct 9360757 CTTGAAACCATCTCCTCTTTTCTCCACATGAAACGCAACATGGCTTGGTTCACCCAGGTA 9360698 Query 1147 AAGGAAGT--CGCCTGCTCGGCCGCTAGATTCTTTT-CAGACTCTGGCACTCTCGCCGAC 1203 || | ||| || || | | ||| ||| |||| || || ||||| || || ||| Sbjct 9360697 AAAGGAGTTGCGGATGAT--GTTGCTGCATTTTTTTGAAGGATCCGGCACCCTTGCTGAC 9360640 Query 1204 TGTTCTCCACACGGTCTGGTCTCAAACCAGATCATTGTTGCGATTACTC-CTC-CACCTG 1261 || || ||||| ||| ||| | ||||| |||| | | || ||| ||| | Sbjct 9360639 TGCTCACCACATGGTTCGGTTGCTAACCA------AGTTGTGGTCTGTCTCTCTAACCCG 9360586 Query 1262 AGGAGACTTTTGCTGATC--CCCGCTT-CTCCGCCGATCCAAGAGCCCTCTATCCCTTCA 1318 | | | || | || | || ||| | || ||| | || |||| |||| Sbjct 9360585 A--AACATCTTCCGGACCCACCAACTTGCATTGCAGATAAGCGTGCAACCTATGAGTTCA 9360528 Query 1319 GTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCAGCCT 1378 | | |||||| || ||||| || || | |||||| || | |||||||||||| || |||| Sbjct 9360527 GCTACAAGCTTAAAAGCACAGCTCATACCCTCCCTCCCCATGCGGAAGCTGCTGCCGCCT 9360468 Query 1379 TCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGGTCAAA 1438 |||| |||||||| ||| |||| ||||| | | || || ||| | |||||| | Sbjct 9360467 TCTCTCAGACGCATATCAGGATGTTTCCCAACCATCCATTATTCGGGACGTTTGGTTCGA 9360408 Query 1439 AGACCGACGAATCA-GGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCACCGAC 1497 | || | |||| | ||| || ||| | || |||||||||||||||||| ||||| Sbjct 9360407 AAACTCTTG-ATCATGTCCCGTTCTGGAAAATAAGGCCCATTGGCTCCAGCATTACCGAG 9360349 Query 1498 GACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 ||| ||||||||||||||| ||| | | |||||| |||| ||| Sbjct 9360348 AACAGCTCCTACCTCACCATTCCATCGACTGTCAAGCAAGCATTCA 9360303 >seq1 Length=23241285 Score = 123 bits (136), Expect = 3e-25 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1315 TTCAGTTTCAAGCTGAAGAGCACCGCCCACAACCTCCCCCCACTTGCGGAAGCTGCCGCA 1374 ||||| | |||||| || ||||| || | | |||||| | | |||||||||| || Sbjct 8266906 TTCAGCTACAAGCTTAAAAGCACAGCTCGTACCCTCCCTCACCGAGCGGAAGCTGTTGCC 8266847 Query 1375 GCCTTCTCCCAGACGCACATCCGGATTTTTCCGGAATACCCGTTGGCCGGAAACTTTGGT 1434 ||| |||| |||||||| ||| |||| ||||| | | || || ||| | |||||| Sbjct 8266846 GCCATCTCTCAGACGCATATCAGGATGTTTCCTAACCATCCATTCTTCGGGACGTTTGGT 8266787 Query 1435 -CAAAAGACCGACGAATCAGGCCCCTTTTGGGACATCAGGCCCATTGGCTCCAGCCCCAC 1493 | ||| || | | |||| || ||||| || ||||||||||| || |||| || Sbjct 8266786 TCGAAA-----ACTCTTGATGCCCGTTCTGGGAAATAAGGCCCATTGGTTCAAGCCTTAC 8266732 Query 1494 CGACGACACCTCCTACCTCACCATCCCACCCATGGTCAAGGCAGCACTCA 1543 ||| ||| ||||||||||||||| ||| | | ||||||| |||| ||| Sbjct 8266731 CGAGAACAGCTCCTACCTCACCATTCCATCGACGGTCAAGCAAGCATTCA 8266682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5530612455368