Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20bursa-pastoris_20[genbank_20GCA_5F001974645.1_202017-01- 29] 8,186 sequences; 268,430,517 total letters Query= NC_009521.1 Length=1479 Score E Sequences producing significant alignments: (Bits) Value seq99 154 1e-34 >seq99 Length=1465915 Score = 154 bits (170), Expect = 1e-34 Identities = 245/351 (70%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 710 CTCAAAAGGCCCAAGACCATCACGGATTTACCCGTGG---TTGCCCCATTTGCCTTTGCA 766 |||| |||||| || |||||||| |||||||||| |||| |||||||| |||||| Sbjct 18151 CTCAGAAGGCCAAAAGGAATCACGGACTTACCCGTGGACGTTGCACCATTTGCTTTTGCA 18092 Query 767 ATACAACAACTTGGTTATGTCAACATCGCCAATCTCACTGAAGAAAGGAGGTATGTCCCT 826 || |||||||| || |||||||||| | || |||||| | | ||||||||| Sbjct 18091 ATTCAACAACTCGGAGCTGTCAACATCACTAACCTCACTCATCCGGCACGTTATGTCCCT 18032 Query 827 GTTTTACCCGAGACCGGACACACTTTTGGAATTCCGACTGGACACAATTGGAACCCCAAC 886 ||| | || ||||||||| | ||| |||||| | | ||||||||| | Sbjct 18031 GTTCTCCCTCCGACCGGACATCAATACGGACTTCCGAATAACCGAGTTTGGAACCCTGAG 17972 Query 887 CTGTATGCCCAAGCTGTAGACTATGCAAGAAAATTTGGTCTCCACTTTAATGTGGTAGAC 946 ||| || |||||||| || ||||| | ||| || || ||||||||||||||||| || Sbjct 17971 GCGTACGCACAAGCTGTGGAATATGCTACAAACTTCGGACTCCACTTTAATGTGGTTGAT 17912 Query 947 TACACCAAGAAGCAAGGCACTGCCTGGTGGCTGTTACGCCAGCACTTTGAAGACGGAATC 1006 | | |||| || || |||||||| | | | || || || || ||||| Sbjct 17911 CTGAACGTGAAGACCGGTACCCCCTGGTGGTTACTGAGACAACATTTCTCTGAAGGAATG 17852 Query 1007 TTCGAGCTGCAACTCCCACTTCCAGAAGTGAACTTTACTTCTTCGATGGCT 1057 |||||| || | |||| | || || || |||| |||||| | |||||| Sbjct 17851 TTCGAGTTGAAGCTCCTGTTCCCGGATGTAAACTACACTTCTGCCATGGCT 17801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4623597821820